View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_low_37 (Length: 280)

Name: NF1706_low_37
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_low_37
NF1706_low_37
[»] chr6 (3 HSPs)
chr6 (9-204)||(3712290-3712484)
chr6 (207-256)||(3710787-3710836)
chr6 (153-198)||(33806691-33806736)
[»] chr7 (1 HSPs)
chr7 (115-202)||(37502170-37502257)
[»] chr5 (2 HSPs)
chr5 (111-203)||(26675284-26675376)
chr5 (111-203)||(26946892-26946984)
[»] chr1 (4 HSPs)
chr1 (134-197)||(18894615-18894678)
chr1 (129-187)||(35621313-35621371)
chr1 (153-206)||(12436955-12437008)
chr1 (111-187)||(13360321-13360397)
[»] chr3 (1 HSPs)
chr3 (131-185)||(7672356-7672410)
[»] chr8 (2 HSPs)
chr8 (131-200)||(14479062-14479131)
chr8 (112-201)||(40680930-40681019)
[»] chr4 (2 HSPs)
chr4 (111-188)||(10462828-10462905)
chr4 (131-188)||(52701021-52701078)
[»] chr2 (4 HSPs)
chr2 (130-187)||(11281369-11281426)
chr2 (153-202)||(13478786-13478835)
chr2 (131-195)||(3019959-3020023)
chr2 (110-202)||(29926904-29926996)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 3712484 - 3712290
Alignment:
Q  9 gaagaatatccaggaaatgaaaattgctagttatgccagcaaaataaaaacatataaatattttattggcaaaattgcnnnnnnnnnnaaaaaccaaaat 108  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||           ||| |||||||    
T  3712484 gaagaaaatccaggaaatgaaaattgctagccatgccagcaaaataaaaacatataaatattttattggcaaaattgcattttttttttaaa-ccaaaat 3712386  T
Q  109 gagtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcattcc 204  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||    
T  3712385 gagtaatagtcaattttgtttctgaatgtgtaacgaatagttataataatttttgaatgtattgaaattctaaaatagtcattgattatgcattcc 3712290  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 3710787 - 3710836
Alignment:
Q  207 catgagacattcttctatggtcacaatcataaaagaatagtgttagggca 256  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||||||    
T  3710787 catgagacattcttctatggttacaagcctaaaagaatagtgttagggca 3710836  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 33806691 - 33806736
Alignment:
Q  153 aataatctttgaatatatctaaattctaaaatagtcattgattatg 198  Q
    ||||||| || ||| |||| ||||||||||||||||||||||||||    
T  33806691 aataatcctttaatgtatcgaaattctaaaatagtcattgattatg 33806736  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 37502170 - 37502257
Alignment:
Q  115 tagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcatt 202  Q
    ||||||| ||||| |||||||||||||| |||||  | |||||||||| |||||||| ||||| ||||||| ||| ||||||||||||    
T  37502170 tagtcaactttgtctctgaatgtgtaacgaataaccacaataatcttttaatatatcaaaattttaaaataatcaatgattatgcatt 37502257  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 26675376 - 26675284
Alignment:
Q  111 gtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcattc 203  Q
    |||||||||| ||| |||  |||||||||||  | |||| | |||||||||| ||| |||| | |||||||||||||| |||||| |||||||    
T  26675376 gtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgcattc 26675284  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 26946984 - 26946892
Alignment:
Q  111 gtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcattc 203  Q
    |||||||||| ||| |||  |||||||||||  | |||| | |||||||||| ||| |||| | |||||||||||||| |||||| |||||||    
T  26946984 gtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgcattc 26946892  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 18894615 - 18894678
Alignment:
Q  134 atgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattat 197  Q
    ||||||||||| || | |||||| |||||||||||||| ||||| |||| ||||| ||||||||    
T  18894615 atgtgtaacaagtagtcataatagtctttgaatatatcgaaattttaaagtagtcgttgattat 18894678  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 35621313 - 35621371
Alignment:
Q  129 tctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagt 187  Q
    ||||||||||||| || || |||||||||||||| ||| ||||  ||||||||||||||    
T  35621313 tctgaatgtgtaataagtagttataataatcttttaatgtatcataattctaaaatagt 35621371  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 12437008 - 12436955
Alignment:
Q  153 aataatctttgaatatatctaaattctaaaatagtcattgattatgcattccat 206  Q
    |||||||||||| |||||| |||||  |||||||| ||||||| ||||||||||    
T  12437008 aataatctttgattatatcaaaatttcaaaatagttattgattgtgcattccat 12436955  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 13360397 - 13360321
Alignment:
Q  111 gtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagt 187  Q
    |||||||||| ||| |||||||||| ||| |||| || | | ||||||||||||||| ||| |||||  ||||||||    
T  13360397 gtaatagtcattttggtttctgaatttgttacaagtagtcacaataatctttgaatacatcgaaatttcaaaatagt 13360321  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 7672356 - 7672410
Alignment:
Q  131 tgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaata 185  Q
    ||||||||||| ||||| |||||||||||||| ||| |||  |||||||||||||    
T  7672356 tgaatgtgtaataaatagttataataatcttttaatgtattaaaattctaaaata 7672410  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 14479062 - 14479131
Alignment:
Q  131 tgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgca 200  Q
    ||||||||||| ||||| ||||||||||  || ||| |||  |||||||||||||||  |||||||||||    
T  14479062 tgaatgtgtaagaaatagttataataataatttaatgtattaaaattctaaaatagtatttgattatgca 14479131  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 40681019 - 40680930
Alignment:
Q  112 taatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcat 201  Q
    ||||||| | ||| || |||||||||||||||| |||||| |||| || |||  | |||| |||||| ||||||||||||| || |||||    
T  40681019 taatagttattttagtctctgaatgtgtaacaagtaattacaatagtccttgggtgtatcgaaattccaaaatagtcattggttgtgcat 40680930  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 10462905 - 10462828
Alignment:
Q  111 gtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtc 188  Q
    |||||||||||||| |||| ||| |||||||||| || | |||||| || || ||| |||| ||||| ||||||||||    
T  10462905 gtaatagtcaatttagtttgtgattgtgtaacaagtagtcataatagtcatttaatgtatcaaaattgtaaaatagtc 10462828  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 52701078 - 52701021
Alignment:
Q  131 tgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtc 188  Q
    ||||||||||||||||||| ||||||||  || | | |||||||||| ||||||||||    
T  52701078 tgaatgtgtaacaaataatcataataattcttaactgtatctaaattttaaaatagtc 52701021  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 11281369 - 11281426
Alignment:
Q  130 ctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagt 187  Q
    |||||||||||||||||||| | |||||| ||| | |||||| ||||| |||||||||    
T  11281369 ctgaatgtgtaacaaataatcacaataatatttcattatatcaaaattttaaaatagt 11281426  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 13478835 - 13478786
Alignment:
Q  153 aataatctttgaatatatctaaattctaaaatagtcattgattatgcatt 202  Q
    ||||||||||||||||||| ||||| |||||||||  |||||| ||||||    
T  13478835 aataatctttgaatatatcaaaattttaaaatagtttttgattgtgcatt 13478786  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 3019959 - 3020023
Alignment:
Q  131 tgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgatt 195  Q
    ||||||| |||  |||| |||||||||||||| |||||||  ||||| |||||||||| ||||||    
T  3019959 tgaatgtataaagaatagttataataatctttcaatatattgaaattataaaatagtctttgatt 3020023  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 29926996 - 29926904
Alignment:
Q  110 agtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcatt 202  Q
    ||||||||||| ||| || | ||||||||||| ||||| ||  ||||||| ||  || |||| ||||| ||||||||||| ||||| ||||||    
T  29926996 agtaatagtcattttagtctttgaatgtgtaataaatagttgcaataatcctttgatgtatcaaaattttaaaatagtcaatgattgtgcatt 29926904  T

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