View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_39 (Length: 267)
Name: NF1706_low_39
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 1535478 - 1535265
Alignment:
| Q |
39 |
aaaatgcacttaaaaagacattctatgcatttcctacaatttaagnnnnnnn-cagcatctactttagaatctcatggtggctgtctaccaactcataat |
137 |
Q |
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| T |
1535478 |
aaaatgcacttaaaaaggcattctatgcatttcctacaatttaagaaaaaaaacagcatctactttagaatctcatggtggctgtctaccaactcatagt |
1535379 |
T |
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| Q |
138 |
tggtcctattttatgttatgttaccttcttttaatacagttaattgtgcttttcccatgagtagttatgttccaatgattaggtcttacatgaacttgta |
237 |
Q |
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| T |
1535378 |
tggtcgtgttttatgttatgttaccttcttttaatatagttaattgtgcttttcccatgagtagttatgttccaatgattaggtcttacatgaacttgta |
1535279 |
T |
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| Q |
238 |
tatcaagttgtttg |
251 |
Q |
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| T |
1535278 |
tatcaagttgtttg |
1535265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 1497899 - 1497772
Alignment:
| Q |
118 |
gctgtctaccaactcataattggtcctattttatgttatgttaccttcttttaatacagttaattgtgcttttcccatgagtagttatgttccaatgatt |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
1497899 |
gctgtctaccaactcatagttggtcctattttatgttatattaccttcttttaatttagttaattgtgcttttaccat--gtagctatgttccaatgatt |
1497802 |
T |
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| Q |
218 |
aggtcttacatgaacttgtatatcaagttg |
247 |
Q |
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| T |
1497801 |
aggtcaaagatgaacttgtatatcaagttg |
1497772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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