View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_40 (Length: 266)
Name: NF1706_low_40
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 8335487 - 8335668
Alignment:
| Q |
80 |
ccttaaaaattaaggcggataagaatttaatcagtattacgtgaaattatgactagatacatacatagcttagtacctataaatacctgaatgttgttga |
179 |
Q |
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| T |
8335487 |
ccttaaaaattaaggcggataagaatttaatcagtattacgtgtaattatgactagatac----atagcttagtatctataaatacctgaatgttgttga |
8335582 |
T |
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| Q |
180 |
cactatattgtaagaaaatcagaaagctaatagtaagatggaaaagttaatgtgggttagattgacaatttttcttgttttatttg |
265 |
Q |
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| T |
8335583 |
cactatattgtaagaaaatcagaaagctaatagtaagatggaaaagttaatgtgggttagattgacaatttttattgttttatttg |
8335668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 8335415 - 8335450
Alignment:
| Q |
8 |
agattattctcgaagactaatatgaatattataatg |
43 |
Q |
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| T |
8335415 |
agattattctcgaagactaatatgaatattataatg |
8335450 |
T |
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