View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_low_44 (Length: 249)

Name: NF1706_low_44
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_low_44
NF1706_low_44
[»] chr8 (7 HSPs)
chr8 (5-239)||(35900875-35901109)
chr8 (1-62)||(9548066-9548127)
chr8 (192-239)||(35898065-35898112)
chr8 (1-78)||(11114268-11114345)
chr8 (16-75)||(29797944-29798003)
chr8 (5-54)||(13210000-13210049)
chr8 (16-71)||(43295213-43295265)
[»] chr2 (19 HSPs)
chr2 (5-81)||(38935361-38935437)
chr2 (16-78)||(16564423-16564485)
chr2 (5-88)||(16180426-16180509)
chr2 (8-78)||(24037585-24037655)
chr2 (5-74)||(944807-944876)
chr2 (5-73)||(43398844-43398912)
chr2 (17-77)||(4445866-4445926)
chr2 (19-75)||(41099028-41099084)
chr2 (5-77)||(43042202-43042274)
chr2 (9-79)||(1862657-1862725)
chr2 (5-75)||(41374533-41374603)
chr2 (5-78)||(10459302-10459375)
chr2 (5-78)||(31469107-31469180)
chr2 (5-74)||(35311190-35311258)
chr2 (1-78)||(41912078-41912155)
chr2 (5-59)||(19924340-19924394)
chr2 (5-62)||(7932779-7932836)
chr2 (1-74)||(11386341-11386414)
chr2 (17-74)||(13453630-13453686)
[»] chr4 (8 HSPs)
chr4 (5-74)||(54235227-54235296)
chr4 (5-75)||(12276856-12276926)
chr4 (1-81)||(4423181-4423261)
chr4 (4-73)||(5496857-5496926)
chr4 (1-77)||(30848592-30848670)
chr4 (5-75)||(18995137-18995205)
chr4 (5-78)||(54009985-54010057)
chr4 (21-77)||(2871550-2871606)
[»] chr6 (8 HSPs)
chr6 (8-78)||(30531217-30531287)
chr6 (5-81)||(31323850-31323926)
chr6 (1-73)||(35003791-35003863)
chr6 (5-78)||(2282434-2282507)
chr6 (36-81)||(14222860-14222905)
chr6 (8-76)||(30531181-30531249)
chr6 (1-55)||(9829923-9829977)
chr6 (1-77)||(28004655-28004731)
[»] chr5 (15 HSPs)
chr5 (5-77)||(39030599-39030671)
chr5 (1-77)||(20185315-20185391)
chr5 (5-73)||(2424444-2424512)
chr5 (1-73)||(14646368-14646440)
chr5 (5-77)||(33669929-33670001)
chr5 (7-74)||(30293414-30293481)
chr5 (3-73)||(9530947-9531017)
chr5 (5-74)||(17555949-17556018)
chr5 (1-50)||(19644427-19644476)
chr5 (1-62)||(23344913-23344974)
chr5 (5-78)||(34252753-34252826)
chr5 (18-74)||(12619668-12619724)
chr5 (1-51)||(33498393-33498443)
chr5 (1-74)||(968287-968360)
chr5 (1-81)||(17234531-17234610)
[»] chr3 (12 HSPs)
chr3 (1-81)||(26914448-26914527)
chr3 (5-75)||(47783114-47783184)
chr3 (5-78)||(32221471-32221544)
chr3 (3-74)||(11256559-11256630)
chr3 (1-73)||(26104250-26104322)
chr3 (5-73)||(37330963-37331031)
chr3 (1-73)||(46733049-46733121)
chr3 (5-78)||(15282640-15282713)
chr3 (41-74)||(30807003-30807036)
chr3 (5-77)||(31280191-31280263)
chr3 (2-74)||(32221503-32221575)
chr3 (21-73)||(32729508-32729560)
[»] chr1 (14 HSPs)
chr1 (2-81)||(31784768-31784847)
chr1 (1-75)||(3693991-3694065)
chr1 (4-75)||(26265783-26265854)
chr1 (7-78)||(37918915-37918986)
chr1 (5-78)||(3739815-3739888)
chr1 (1-74)||(30693367-30693440)
chr1 (2-73)||(29846639-29846710)
chr1 (1-59)||(5056314-5056372)
chr1 (1-78)||(6061461-6061538)
chr1 (1-78)||(47543631-47543708)
chr1 (5-78)||(19758271-19758345)
chr1 (7-77)||(27527707-27527777)
chr1 (8-78)||(29855097-29855167)
chr1 (6-78)||(5693575-5693647)
[»] chr7 (11 HSPs)
chr7 (5-78)||(18731991-18732064)
chr7 (1-74)||(32652411-32652484)
chr7 (17-73)||(23971191-23971247)
chr7 (5-75)||(3769757-3769827)
chr7 (5-74)||(14773507-14773576)
chr7 (5-74)||(15223959-15224028)
chr7 (5-74)||(44816503-44816572)
chr7 (1-62)||(47967945-47968006)
chr7 (17-72)||(4259313-4259368)
chr7 (8-83)||(5026136-5026211)
chr7 (5-77)||(16866403-16866475)
[»] scaffold0067 (1 HSPs)
scaffold0067 (5-78)||(35976-36049)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-54)||(94978-95031)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-75)||(51225-51299)
[»] scaffold0027 (1 HSPs)
scaffold0027 (5-78)||(13210-13283)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 35901109 - 35900875
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggacagaaaaagtagtgaataaatggaagt 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35901109 ttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggaacagaaaaagtagtgaataaatggaagt 35901010  T
Q  105 cctacgtcgaaaaaagaaaaccaaaagtgtgaataaacgtctcacatcaaagtttatgaaaaataaagagagcaacactaaacttagccatgtcattcct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35901009 cctacgtcgaaaaaagaaaaccaaaagtgtgaataaacgtctcacatcaaagtttatgaaaaataaagagagcagcactaaacttagccatgtcattcct 35900910  T
Q  205 ctatatttggcactgtccttatagtcaagagtatt 239  Q
    |||||||||||||||||||||||||||||||||||    
T  35900909 ctatatttggcactgtccttatagtcaagagtatt 35900875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9548127 - 9548066
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcattttt 62  Q
    ||||||| | |||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9548127 aaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcattttt 9548066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 35898112 - 35898065
Alignment:
Q  192 ccatgtcattcctctatatttggcactgtccttatagtcaagagtatt 239  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  35898112 ccatggcattcctctatctttggcactgtccttatagtcaagagtatt 35898065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11114268 - 11114345
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    ||||||||||||||  ||| ||||||| ||| || ||||||||||||||||||   |||||| |||||||||||||||    
T  11114268 aaaattaatgtattcagtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttgggac 11114345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 29798003 - 29797944
Alignment:
Q  16 ggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    |||||||||||||||| || ||||| || ||||||| ||||||||||||||| |||||||    
T  29798003 ggttcaaaatttgtaccaaatacataaatttatgttaactcatttttgcttacattttgg 29797944  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 13210000 - 13210049
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgac 54  Q
    |||||||||| |||||||||||||||  |  |||||||||||||||||||    
T  13210000 ttaatgtatttggttcaaaatttgtatcagatacatcaacttatgttgac 13210049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 43295265 - 43295213
Alignment:
Q  16 ggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatt 71  Q
    ||||||||||||||||    ||||||||||||||||||  ||||||||||||||||    
T  43295265 ggttcaaaatttgtaca---tacatcaacttatgttgatccatttttgcttatatt 43295213  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 38935437 - 38935361
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggacaga 81  Q
    ||||||||||  ||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||||    
T  38935437 ttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttgggacaga 38935361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 16564423 - 16564485
Alignment:
Q  16 ggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||||||||    
T  16564423 ggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttgggac 16564485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 16180509 - 16180426
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggacagaaaaagta 88  Q
    |||||||||| |||||||||||| || | | |||||||| ||||||||||| ||||||||||| |||||||||| || ||||||    
T  16180509 ttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacattttgggacggagaaagta 16180426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 24037655 - 24037585
Alignment:
Q  8 atgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||  ||||||||||||||| || || ||||||||||||||||||||||||||||| ||||| ||||    
T  24037655 atgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacattttaggac 24037585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 944807 - 944876
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    ||||||||||  ||||||||||||||| || |||||||||||||||||||| |||||| |||| ||||||    
T  944807 ttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttg 944876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 43398912 - 43398844
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    |||||||||| |||||||||||||||| || ||||||||||||| ||||| ||||||| |||| |||||    
T  43398912 ttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacatttt 43398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 4445926 - 4445866
Alignment:
Q  17 gttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    ||||||||||||||| || |||||||| |||| || ||| |||||||||||||||||||||    
T  4445926 gttcaaaatttgtaccaaatacatcaatttatattaacttatttttgcttatattttggga 4445866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 41099028 - 41099084
Alignment:
Q  19 tcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    ||||||||||||| || ||||| ||||||||||||| |||||||||||| |||||||    
T  41099028 tcaaaatttgtaccaaatacattaacttatgttgacccatttttgcttacattttgg 41099084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 43042202 - 43042274
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    |||||||||| |||||||||||| ||  |  ||||||||||| |||| ||||||||||||||| |||||||||    
T  43042202 ttaatgtattcggttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttggga 43042274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 1862725 - 1862657
Alignment:
Q  9 tgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggaca 79  Q
    |||||| | ||||||||||||   || |||||||||||||||||||||||||||||  |||||||||||||    
T  1862725 tgtatttgattcaaaatttgtgtcaaatacatcaacttatgttgactcatttttgc--atattttgggaca 1862657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 41374603 - 41374533
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    |||||||||| | |||||| ||| ||| || ||||||||||| |||| ||||||||||||||| |||||||    
T  41374603 ttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttttgcttacattttgg 41374533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 10459302 - 10459375
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| |||||||||||||||  |  | |||||||||||||||||  || |||||||| ||||||||||    
T  10459302 ttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttgggac 10459375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 31469107 - 31469180
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| |||| ||||||||||  || ||||| |||||  ||||||  ||||||||||||||||||||||    
T  31469107 ttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgcttatattttgggac 31469180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 35311258 - 35311190
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||| |||||||||||||||| |  || || ||||||||||||| |||||||||||| ||||||    
T  35311258 ttaatgtatttggttcaaaatttgtacaagatatat-aacttatgttgacccatttttgcttacattttg 35311190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41912155 - 41912078
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||||||  |||||||||||||||| |  || || |||||||||||||| |||||| ||| |||||| ||||    
T  41912155 aaaattaatgtatctggttcaaaatttgtaccagctagattaacttatgttgacttatttttacttgtattttaggac 41912078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 19924340 - 19924394
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatt 59  Q
    |||||||||  |||||||||||||||| || |||||||||||| |||||| ||||    
T  19924340 ttaatgtatatggttcaaaatttgtaccaaatacatcaacttacgttgacccatt 19924394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 7932779 - 7932836
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcattttt 62  Q
    |||| ||||| |||||||||||| ||  |  |||||||||||||||||||||||||||    
T  7932779 ttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcattttt 7932836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11386341 - 11386414
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    ||||||||| ||||   |||||||||||||  || ||||||||||||||||||   | ||||||||||||||||    
T  11386341 aaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg 11386414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 13453630 - 13453686
Alignment:
Q  17 gttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    ||||||||||||| |||| | |||||| |||||||||| ||||||| |||||||||||    
T  13453630 gttcaaaatttgtgctaaatgcatcaatttatgttgacacattttt-cttatattttg 13453686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 54235296 - 54235227
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||    
T  54235296 ttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacattttg 54235227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 12276856 - 12276926
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    |||||||||| | |||||||||| |||||| |||||||||||||||||||  |||||||||||||||||||    
T  12276856 ttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgcttatattttgg 12276926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4423181 - 4423261
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggacaga 81  Q
    ||||||||| |||| | |||||||||||||| || ||||||||||||| ||||  |||||||||||| |||||||||||||    
T  4423181 aaaattaatatatttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttgggacaga 4423261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 5496926 - 5496857
Alignment:
Q  4 attaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    ||||||||||| |||||||||||||||| || || |||||||||| |||||||||||||| ||| |||||    
T  5496926 attaatgtatttggttcaaaatttgtaccaaataaatcaacttatattgactcatttttgtttacatttt 5496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30848670 - 30848592
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtac--taattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    ||||||||||||||  |||||||||||||||  ||  ||||||||||||||||||  |||||||||||| |||||||||    
T  30848670 aaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgcttacattttggga 30848592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 18995205 - 18995137
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    |||||||||| |||||||||||||||| |  ||||||||||||| ||||||  ||||||||||||||||||    
T  18995205 ttaatgtatttggttcaaaatttgtac-agatacatcaacttat-ttgactactttttgcttatattttgg 18995137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 54010057 - 54009985
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| | |||||||||| ||| || || | || |||||||||||  ||||||||||||||||||||||    
T  54010057 ttaatgtatttgattcaaaatttataccaaatagaaca-cttatgttgaccaatttttgcttatattttgggac 54009985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 2871550 - 2871606
Alignment:
Q  21 aaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    ||||||| ||| || ||||||||||| |||| ||  |||||||||||||||||||||    
T  2871550 aaaatttatacaaaatacatcaacttttgtttaccgatttttgcttatattttggga 2871606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 30531217 - 30531287
Alignment:
Q  8 atgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    ||||||| |||||||| ||||||| || |||||||||||||||||| ||||||||||||| ||||||||||    
T  30531217 atgtatttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttgggac 30531287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 31323850 - 31323926
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggacaga 81  Q
    ||||||||||  ||||||||||||||| |  |||||||||||||||||||  ||||||||||| |||||||||||||    
T  31323850 ttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttgggacaga 31323926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35003791 - 35003863
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    |||||||||||||| | |||||||||||||| || || ||||||||||||||| ||||||||||||| |||||    
T  35003791 aaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttgattcatttttgcttacatttt 35003863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 2282434 - 2282507
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    ||||||||||  |||||||| |||||  || |||||||| ||||||| ||| |||||||||||||| |||||||    
T  2282434 ttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgttaactaatttttgcttatatattgggac 2282507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 14222860 - 14222905
Alignment:
Q  36 tacatcaacttatgttgactcatttttgcttatattttgggacaga 81  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||    
T  14222860 tacatcaacttatgttgacccatttttgcttacattttggaacaga 14222905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 30531249 - 30531181
Alignment:
Q  8 atgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggg 76  Q
    ||||||| ||| |||| |||| || || ||||||||||||||||||| | |||||||||| ||||||||    
T  30531249 atgtatttggtacaaactttgaaccaaatacatcaacttatgttgacccgtttttgcttacattttggg 30531181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9829923 - 9829977
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgact 55  Q
    ||||||||||||||  ||| ||||||||||| || |||||||| |||||||||||    
T  9829923 aaaattaatgtattttgtttaaaatttgtaccaaatacatcaatttatgttgact 9829977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28004655 - 28004731
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    |||||||||||||| ||| |||| ||||  | || ||||| ||||| |||||||| |||||  ||||||||||||||    
T  28004655 aaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatattttggga 28004731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 39030599 - 39030671
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    |||||||||| |||| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||    
T  39030599 ttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttggga 39030671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20185391 - 20185315
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    |||||||||||||| |||||||||||||||| || |||||| |||||| || ||||||||||  ||| |||||||||    
T  20185391 aaaattaatgtatttggttcaaaatttgtacaaaatacatcgacttatattaactcatttttatttacattttggga 20185315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 2424512 - 2424444
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    |||||||||| |||||||||||||||| |  ||||||| |||||||| ||  |||||||||||||||||    
T  2424512 ttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatatttt 2424444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 14646440 - 14646368
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    |||||||||||||  | ||||||||||||||||| ||||| || |||| |||||| |||||| ||||||||||    
T  14646440 aaaattaatgtatatgattcaaaatttgtactaaatacattaatttatattgacttatttttacttatatttt 14646368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 33670001 - 33669929
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    |||||||||| |||| ||||||||||| |  ||||  ||||||||||||| |||||||||||| |||||||||    
T  33670001 ttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttacattttggga 33669929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 30293414 - 30293481
Alignment:
Q  7 aatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||| | |||||||||| ||  || ||||||||| ||||||||||||||||| |||||||||||    
T  30293414 aatgtatttgattcaaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttg 30293481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 9530947 - 9531017
Alignment:
Q  3 aattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    |||||||||||| |||||||||||| ||  || |||| ||| |||| |||||||||||||||||| |||||    
T  9530947 aattaatgtatttggttcaaaatttatatcaaatacaccaatttatattgactcatttttgcttacatttt 9531017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 17556018 - 17555949
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||  |||||||||||| ||  || || ||||||||| |||||||||||||| |||||||||||    
T  17556018 ttaatgtatgtggttcaaaatttatatcaaatatatcaacttacgttgactcatttttacttatattttg 17555949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19644476 - 19644427
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgt 50  Q
    |||||||| ||||| |||||||||||| |||||| |||||||||||||||    
T  19644476 aaaattaacgtatttggttcaaaatttatactaaatacatcaacttatgt 19644427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23344913 - 23344974
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcattttt 62  Q
    ||||||||||||||  ||||||||||| |||||| || |||||||| || ||||||||||||    
T  23344913 aaaattaatgtatttagttcaaaatttatactaagtatatcaacttttgctgactcattttt 23344974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 34252753 - 34252826
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| |||||||||||| | | |  | |||||||||||||| || |||||||||||| ||||||||||    
T  34252753 ttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccatttttgcttacattttgggac 34252826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 12619668 - 12619724
Alignment:
Q  18 ttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||| ||  || ||||||||||||||||||  |||||||||||||||||||    
T  12619668 ttcaaaatttatatcaaatacatcaacttatgttgatccatttttgcttatattttg 12619724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33498393 - 33498443
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgtt 51  Q
    ||||| ||| |||| |||||||||||||||| || ||||||||||||||||    
T  33498393 aaaatcaatatatttggttcaaaatttgtacaaaatacatcaacttatgtt 33498443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 968360 - 968287
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    ||||||||| ||||  ||||||||||||||| || ||||||||||||  ||||| || |||| |||| ||||||    
T  968360 aaaattaatatatttagttcaaaatttgtaccaaatacatcaacttaaattgacccacttttacttacattttg 968287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 17234610 - 17234531
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggacaga 81  Q
    ||||||||| ||||  ||| ||||||||||  || ||||| || |||| || |||||||||||||||||||||| ||||||    
T  17234610 aaaattaatatattttgtttaaaatttgtagcaaatacattaatttatatt-actcatttttgcttatattttgtgacaga 17234531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 26914527 - 26914448
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggacaga 81  Q
    |||||||||||||  |||||||||||| |||||| |||||||||||| |||| | |||||||||||| |||||||||||||    
T  26914527 aaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttgtc-catttttgcttacattttgggacaga 26914448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 47783114 - 47783184
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    |||||||||| |||||||||||||||  |  ||||||  ||||||||||||||||||||||||||||||||    
T  47783114 ttaatgtatttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatattttgg 47783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 32221544 - 32221471
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| |||||||||||||||| || |||||||| ||||| |||   ||||||||||| ||||||||||    
T  32221544 ttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttgggac 32221471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 11256559 - 11256630
Alignment:
Q  3 aattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||||| | | |||||||||||  || ||||||||| |||||| | ||||||||||||||||||||    
T  11256559 aattaatgtatttgatccaaaatttgtatcaaatacatcaacatatgttaattcatttttgcttatattttg 11256630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26104250 - 26104322
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    |||| |||||||||  ||||||||||||||  ||  | ||||| ||||||||||||||||||||||| |||||    
T  26104250 aaaactaatgtatttagttcaaaatttgtatcaaacaaatcaatttatgttgactcatttttgcttacatttt 26104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 37330963 - 37331031
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    |||||||||  ||||||||||||||||||  ||| |||| ||||||| || |||||||||||| |||||    
T  37330963 ttaatgtatatggttcaaaatttgtactagatacgtcaatttatgttaacccatttttgcttacatttt 37331031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 46733049 - 46733121
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    |||||||||||||| | |||||||||||||  || | ||||| |||| ||||||| ||||||||||| |||||    
T  46733049 aaaattaatgtatttgattcaaaatttgtatcaaatgcatcagcttacgttgacttatttttgcttacatttt 46733121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 15282713 - 15282640
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| | || ||||||||||  |  | ||||||||||||||||  |||||||| ||||||||||||||    
T  15282713 ttaatgtatttgatttaaaatttgtatcagattcatcaacttatgttgatccatttttgtttatattttgggac 15282640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 30807003 - 30807036
Alignment:
Q  41 caacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||||||| |||||||||||||||||||    
T  30807003 caacttatgttgacccatttttgcttatattttg 30807036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 31280191 - 31280263
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    |||||||||| |||||||||||||||| |  ||||| || |||||||||  ||||||| ||||  ||||||||    
T  31280191 ttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttttggga 31280263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 32221503 - 32221575
Alignment:
Q  2 aaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    ||||| ||||||| ||| |||| |||| || || ||||| ||||| |||||||| ||||||||||| ||||||    
T  32221503 aaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattttg 32221575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 32729560 - 32729508
Alignment:
Q  21 aaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    |||||||||| ||| || ||||| ||||||| ||| |||||||||||||||||    
T  32729560 aaaatttgtattaaatagatcaatttatgttaacttatttttgcttatatttt 32729508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 31784768 - 31784847
Alignment:
Q  2 aaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggacaga 81  Q
    |||| ||||||||  |||||||||||||| ||  |||||||||||||||||||  ||||||||||| |||||||||||||    
T  31784768 aaatgaatgtattttgttcaaaatttgtattagatacatcaacttatgttgacaaatttttgcttacattttgggacaga 31784847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3694065 - 3693991
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    |||||||||||||| | ||||||||||||| ||| |||||||| |||||||||||||||| | |||| |||||||    
T  3694065 aaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgactcatttctacttacattttgg 3693991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 26265854 - 26265783
Alignment:
Q  4 attaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    ||||| ||||| |||||||||||| |||||| |||||||||||||||| ||  ||||||||||| |||||||    
T  26265854 attaaagtatttggttcaaaatttatactaaatacatcaacttatgttaacatatttttgcttacattttgg 26265783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 37918986 - 37918915
Alignment:
Q  7 aatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||| |||| ||||||| ||  || |||||||||||||||||| ||||||||||||| ||||||||||    
T  37918986 aatgtatttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgcttacattttgggac 37918915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 3739888 - 3739815
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| |||| ||||||||||| || ||||| |||||  ||||||  ||||||||||||||||||||||    
T  3739888 ttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggac 3739815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30693367 - 30693440
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||||||| | |||||||||||||| || |||||||  ||||||||| |||||||| |||| ||||||    
T  30693367 aaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcatttttacttacattttg 30693440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 29846710 - 29846639
Alignment:
Q  2 aaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    ||||||||||||| |||||||||||| |||| | || |||| ||||||||||| || |||| ||||||||||    
T  29846710 aaattaatgtattcggttcaaaatttatactgaatatatcagcttatgttgacccaattttacttatatttt 29846639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5056372 - 5056314
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatt 59  Q
    |||||||| ||||| | |||||||||||||  || ||||||||||||||||||||||||    
T  5056372 aaaattaacgtatttgattcaaaatttgtatcaaatacatcaacttatgttgactcatt 5056314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6061538 - 6061461
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||||||| | || |||||||||||||  ||||| |||||||||||  ||||| ||||| | ||||||||||    
T  6061538 aaaattaatgtatttgttttaaaatttgtactagatacattaacttatgttggttcattcttgctaacattttgggac 6061461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 47543631 - 47543708
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| ||| |||||||||||||||| || |||||||||||| | |   ||||||| ||||| ||||||||||    
T  47543631 aaaattaatgaatttggttcaaaatttgtaccaaatacatcaacttacgctatttcattttggcttacattttgggac 47543708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 19758345 - 19758271
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttg-actcatttttgcttatattttgggac 78  Q
    ||||||||||  ||| | ||||||||| || |||||||||||| |||  ||||||||||||||| ||||||||||    
T  19758345 ttaatgtatttagtttataatttgtaccaaatacatcaacttacgttatactcatttttgcttacattttgggac 19758271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 27527777 - 27527707
Alignment:
Q  7 aatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    |||||||| |||||||||||| ||| |  ||||||||||||| || || |||||||  |||||||||||||    
T  27527777 aatgtatttggttcaaaatttataccagatacatcaacttatatttacccatttttatttatattttggga 27527707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 29855097 - 29855167
Alignment:
Q  8 atgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    ||||||| |||| ||||||||||| || ||||| ||||| ||||||   ||||||||||||||||| ||||    
T  29855097 atgtatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatattttaggac 29855167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 5693647 - 5693575
Alignment:
Q  6 taatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    ||||| ||| |||| ||||||||||||||  ||||||| |||||||||   ||||||||||| |||| |||||    
T  5693647 taatgcatttggtttaaaatttgtactaaaaacatcaatttatgttgatatatttttgcttacatttcgggac 5693575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 18732064 - 18731991
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| |||||||||||| ||| |  |||||||| |||||||||  |||||||||||||||||||||||    
T  18732064 ttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttgggac 18731991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32652484 - 32652411
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||||||| |||||||| ||||||| || |||| ||| ||||||||||| |||||| |||| ||||||    
T  32652484 aaaattaatgtatttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttg 32652411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 23971247 - 23971191
Alignment:
Q  17 gttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatatttt 73  Q
    ||||||||||||||| || ||||||||||||| |||| | |||||||||||||||||    
T  23971247 gttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatatttt 23971191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 3769827 - 3769757
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    ||||||||||  ||| |||||||||| ||| ||||||||||| ||||||||||||||| |||  |||||||    
T  3769827 ttaatgtatttagtttaaaatttgtattaaatacatcaacttgtgttgactcatttttacttgcattttgg 3769757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 14773507 - 14773576
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||  |||||||||||| ||  |  |||||||||||| |||||||||||||| |||||||||||    
T  14773507 ttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttg 14773576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 15223959 - 15224028
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||  |||||||||||| ||  |  |||||||||||| |||||||||||||| |||||||||||    
T  15223959 ttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttg 15224028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 44816503 - 44816572
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 74  Q
    |||||||||| |||||||||||||||| || |||||||  |||| || | ||||||||||||| ||||||    
T  44816503 ttaatgtatttggttcaaaatttgtaccaaatacatcagtttatattaattcatttttgcttacattttg 44816572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47967945 - 47968006
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcattttt 62  Q
    |||||| |||||||  ||| |||||||||||||| ||||| |||||||||||| ||||||||    
T  47967945 aaaatttatgtatttagtttaaaatttgtactaaatacattaacttatgttgattcattttt 47968006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 4259368 - 4259313
Alignment:
Q  17 gttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattt 72  Q
    ||||||||||| || ||| ||||| |||||||||||||||||||| || |||||||    
T  4259368 gttcaaaatttatagtaaatacattaacttatgttgactcattttcgcgtatattt 4259313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 5026211 - 5026136
Alignment:
Q  8 atgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggacagaaa 83  Q
    ||||||| ||| |||| |||| ||||| || || ||||| |||| ||  |||||||||||||||||||||||||||    
T  5026211 atgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggacagaaa 5026136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 16866475 - 16866403
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttggga 77  Q
    |||||||||| |||| |||||||||||  | ||||| ||||| | ||||   |||||||||||||||||||||    
T  16866475 ttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttggga 16866403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 35976 - 36049
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| ||| |||||||||||  || |||||||| |||| |||||||||||||| ||| ||||||||||    
T  35976 ttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgtttacattttgggac 36049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 94978 - 95031
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgac 54  Q
    ||||||||||||||  ||||||||||||||| || |||||||||||||||||||    
T  94978 aaaattaatgtattatgttcaaaatttgtaccaaatacatcaacttatgttgac 95031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 51299 - 51225
Alignment:
Q  1 aaaattaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 75  Q
    ||||||||||||||  ||||||||||| ||| || |||||||||||||||||||    ||||||||| |||||||    
T  51299 aaaattaatgtatttagttcaaaatttataccaaatacatcaacttatgttgacaatcttttgcttaaattttgg 51225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 13210 - 13283
Alignment:
Q  5 ttaatgtattgggttcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgggac 78  Q
    |||||||||| |||| ||||||||||| |  ||||||||||||| || |||| ||||| |||| ||||| ||||    
T  13210 ttaatgtatttggtttaaaatttgtacaagatacatcaacttatattaactcgtttttacttacattttaggac 13283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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