View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_49 (Length: 240)
Name: NF1706_low_49
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37832183 - 37831962
Alignment:
| Q |
1 |
atttaaagcatcaatgttgaagtactagaacagaagataacaacatttaatccttctggtccatacaagaatgattaatgctgctgtaatagaacaaaaa |
100 |
Q |
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| T |
37832183 |
atttaaatcatcaatgttgaagtactagaacagaagataacaacatttaatccttctggtccatacaagaatgattaatgctgctgtaatagaacaaaaa |
37832084 |
T |
|
| Q |
101 |
aaagttaaggtg-agnnnnnnnnngatacaataatagaatgagatagtgatggaattaatgggaatgtgnnnnnnnggaaatttgatccatagtttgtgg |
199 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37832083 |
aaagttaaggtgaaaaaaaagaaagatacaataatagaatgagatagtgatggaattaatgggaatgtgaaaaaaaggaaatttgatccatagtttgtgg |
37831984 |
T |
|
| Q |
200 |
ataaaatcactgtaacgtgatc |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
37831983 |
ataaaatcactgtaacgtgatc |
37831962 |
T |
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