View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_51 (Length: 238)
Name: NF1706_low_51
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6540866 - 6541090
Alignment:
| Q |
1 |
aagattttaagctgggagattcgtgagcacaatctgaaaagttacaccaatcatgatttgtgatggactaacttgtcccttcccttnnnnnnnnnn-cgt |
99 |
Q |
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| T |
6540866 |
aagattttaagctgggagattcgcgagcacaatctaaaaagttacaccaatcatgatttgtgacggactaacttgtcccttccctttaaaaaaaaaacgt |
6540965 |
T |
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| Q |
100 |
gtgccttgatttttcattacaatgccactatgtcagtaaataatattgttaatgttacatcacataataaacttagtagattaagaaacaattgagtaat |
199 |
Q |
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| T |
6540966 |
gtgccttgatttttcattaaaatgccactatgtcagtaaataatgttgttaatgttacatcacataataaacttagtagattaagaaacaattgagtaat |
6541065 |
T |
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| Q |
200 |
agatttttgttaaggggcaaatgtg |
224 |
Q |
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| T |
6541066 |
agatttttgtcaagggacaaatgtg |
6541090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 6538629 - 6538699
Alignment:
| Q |
103 |
ccttgatttttcattacaatgccactatgtcag-taaataatattgttaatgttacatcacataataaact |
172 |
Q |
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||||||||||||||||||||||| |||||| || ||| |||| |||| |||| ||||||||||||| |||| |
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| T |
6538629 |
ccttgatttttcattacaatgccgctatgtgagataactaatgttgtaaatgctacatcacataattaact |
6538699 |
T |
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