View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_58 (Length: 226)
Name: NF1706_low_58
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_58 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 47 - 226
Target Start/End: Original strand, 50542441 - 50542620
Alignment:
| Q |
47 |
actagaaattcaattcactttttaagatgagtaagcggagaatttaaggttcgaacatcagttcttgtataatgtgtaatgtatctaccaattgagttat |
146 |
Q |
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| T |
50542441 |
actagaaattcaactcactttttaagatgagtaagcggagaatttagggttcgaacatcggttcttgtataatgtgtaatgtatctatcaactgagttat |
50542540 |
T |
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| Q |
147 |
gtttcgagagattaatttattaattcattataaatgtttaagtgagttgtggttcatatatctttaaaacctcattattt |
226 |
Q |
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| T |
50542541 |
gtttagagagattaatttgttaattcattataaatgtttaagtgagttgtggttcatatatcttttaaacctcattattt |
50542620 |
T |
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