View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_59 (Length: 226)
Name: NF1706_low_59
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_59 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8777356 - 8777581
Alignment:
| Q |
1 |
ggattttcaacttctattcttattatagctcaactctttcgatgctcaatctgatttcaggcctctatcatatatttgtttcgtaattgtgcagatctag |
100 |
Q |
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| T |
8777356 |
ggattttcaacttctattcttattatagctcaactctttcgatgctcaatctgatttcaggcctctatcaaatatttgtttcgtaattgtgcagatctag |
8777455 |
T |
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| Q |
101 |
taaaagttattgccgagttcaaggaacaacatagggttttgtttctcttgcgaggannnnnnnnctgggtggaagtaagtcaataaatttatgttcacat |
200 |
Q |
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| T |
8777456 |
taaaagttattaccgagttcaaggaacaacatagggttttgtttctcttgcgaggattttttttctgggtggaagtaagtcaataaatttatgttcacat |
8777555 |
T |
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| Q |
201 |
aatttcctgtattaatgattattttc |
226 |
Q |
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| T |
8777556 |
aatttcctgtattaatgattattttc |
8777581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8789454 - 8789552
Alignment:
| Q |
1 |
ggattttcaacttctattcttattatagctcaactctttcgatgctcaatctgatttcaggcctctatcatatatttgtttcgtaattgtgcagatcta |
99 |
Q |
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| T |
8789454 |
ggattttcaacttctattcttattatcgttcaactctttctattctcaatctgatttcaggcctctaacaaatatttgtttcataattgtgcagatcta |
8789552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8783399 - 8783501
Alignment:
| Q |
1 |
ggattttcaacttctattcttattatagctcaactctttcgatgctcaatctgatttcaggcctctatcatatatttgttt----cgtaattgtgcagat |
96 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||| |||||||||||||| |
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| T |
8783399 |
ggattttcaacttctattctcattattgctcaactctttctatgctcaatctgattactggcctctatcaaatatttgttttgtatgtaattgtgcagat |
8783498 |
T |
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| Q |
97 |
cta |
99 |
Q |
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||| |
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| T |
8783499 |
cta |
8783501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 2540479 - 2540302
Alignment:
| Q |
37 |
tttcgatgctcaatctgatttcaggcctctatcatatatttgtttcgtaattgtgcagatctagtaaaagttattgccgagttcaaggaacaacataggg |
136 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
2540479 |
tttctatgctcaatctgatttccggcctctatcaaatatttgtttcataattatgcagatctagtaaaagttattgcccagttcaaggaacagcataggg |
2540380 |
T |
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| Q |
137 |
ttttgtttctcttgcgaggannnnnnnnctgggtggaagtaagtcaataaatttatgttcacataatttcctgtatta |
214 |
Q |
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|||||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2540379 |
ttttgtttctcttgcgaggattttttttctggttgcaagtaagtcgataaatttatgttcacataatttcctgtatta |
2540302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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