View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_6 (Length: 519)
Name: NF1706_low_6
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 49168275 - 49168778
Alignment:
| Q |
1 |
agtagcatagggagtttgggaatggaatcggtctagtgaaatcaggcgcagaaggagggttggcgcaaccgttaaatgttcatgaaaatagagaaaacag |
100 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49168275 |
agtagcacaaggagtttgggaatggaatcggtctagtgaaatcaggcgaagaaggagggttggcgcaaccgttaaatgttcatgaaaatagagaaaacag |
49168374 |
T |
|
| Q |
101 |
ggcattggtaactctaatgaaggaggtggagccgtggagcccctgatcaatgtgggtggaagtaaggaattttatcatgaagattatacgttacaacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49168375 |
ggcattggtaactctaatgaaggaggtggagccgtggagcccctgatcaatgtgggtggaagtaaggaattttatcatgaagattataagttacaacttt |
49168474 |
T |
|
| Q |
201 |
agagggttgaggggagtagcaaaaaagaaggatgtgtacaagtgatcgggaaaaataatccagatatattgtgtccaagaaactaaattagccgcggtgt |
300 |
Q |
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| T |
49168475 |
agagggttgaggggagtagcaaaaaagaaggatgtgtacaagtgatcgggaaaaataatccagatatattgtgtccaagaaactaaattagccgcggtgt |
49168574 |
T |
|
| Q |
301 |
ataggaaagtttgcaaaattttgtgcggccaaggcatcagaggtaagatcaggaggactattggtgatttggaattataaaaatttaaaattacaatgtg |
400 |
Q |
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| T |
49168575 |
ataggaaagtttgcaaaattttgtgcggccaaggcatcagaggtaagatcaggaggactattagtgatttggaattataaaaatttaaaattacaatgtg |
49168674 |
T |
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| Q |
401 |
aggctagaggggatcattttatttgcttggatggattgtggggacaagaggaaactccagtttctatagtaaatgtatatgcaccttgtaaggcggggag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49168675 |
aggctagaggggatcattttatttgcttggatggattgtggggacaagaggaaactccagtttctatagtaaatgtatatgcaccttgtaaggcggggag |
49168774 |
T |
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| Q |
501 |
gaaa |
504 |
Q |
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| T |
49168775 |
gaaa |
49168778 |
T |
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