View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_60 (Length: 226)
Name: NF1706_low_60
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 46849832 - 46849979
Alignment:
| Q |
73 |
actcatatatcatcttatgatttaagttggttctcactcaatcattacaaaatcgacttgtaattcaataactgtcgccaaatatattcctaaaaccatg |
172 |
Q |
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| T |
46849832 |
actcatatatcatcttatgatttaagttggttctcactcaatcattacaaaatcgacttgtaattcaataactgtcaccaaatatattcctaaaaccatg |
46849931 |
T |
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| Q |
173 |
tgttcgtcaacatgtaacccttccaacttattcaccttatgttgtttc |
220 |
Q |
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| T |
46849932 |
tgttcgtcaacatgtaacccttccaacttattcaccttatgttgtttc |
46849979 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 46849779 - 46849836
Alignment:
| Q |
1 |
catttccttccattcctagacgt-tggtgtgtgacccaacagcgagagacctaactca |
57 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46849779 |
catttccttccattcctagacgtatggtgtgtgacccaacagcgagagacctaactca |
46849836 |
T |
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