View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_62 (Length: 222)
Name: NF1706_low_62
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 9864628 - 9864820
Alignment:
| Q |
18 |
cattagggatagaaatggacccttatatactattnnnnnnnccaccaagacatgttagagttgcttatccaggaatttgcataacaatcttactaggaat |
117 |
Q |
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| T |
9864628 |
cattagggatagaaatggacccttatatactattaaaaaaaccaccaagacatgttagagttgcttatccaggaatttgcataacaatcttactaggaat |
9864727 |
T |
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| Q |
118 |
tattttctccccttttgtaacttacttcccaaacagagataaaatattagaattcacaacagctctttcccttctactagctagcacaggttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9864728 |
tattttctccccttttgtaacttacttcccaaacagagataaaatattagaattcacaacagctctttcccttctactagctagtacaggttc |
9864820 |
T |
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