View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_low_63 (Length: 219)

Name: NF1706_low_63
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_low_63
NF1706_low_63
[»] chr8 (14 HSPs)
chr8 (1-219)||(6353452-6353670)
chr8 (61-219)||(6290420-6290578)
chr8 (59-219)||(6425200-6425360)
chr8 (145-219)||(6364469-6364543)
chr8 (29-219)||(7460552-7460742)
chr8 (147-219)||(6392094-6392166)
chr8 (147-219)||(6411258-6411330)
chr8 (145-219)||(6371300-6371374)
chr8 (138-219)||(6275745-6275826)
chr8 (145-219)||(6264927-6265001)
chr8 (138-219)||(6333173-6333254)
chr8 (138-219)||(6322606-6322687)
chr8 (148-219)||(6458262-6458333)
chr8 (153-219)||(6452174-6452240)
[»] chr2 (1 HSPs)
chr2 (151-219)||(42694394-42694462)
[»] chr3 (1 HSPs)
chr3 (148-215)||(36743954-36744021)
[»] chr5 (1 HSPs)
chr5 (153-219)||(9603102-9603168)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6353452 - 6353670
Alignment:
Q  1 acatgtttagtccaaaatatgacacaagtgtttgtagcctaacctgttttagtttttcttctgccggttcttccccttcgagggtaagggaaatcgctcg 100  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  6353452 acatgtttagtccaaaatctgacagaagtgtttgtggcctaacctgttttagtttttcttctgccagttcttccccttcgagggtaagggaaatcgcttg 6353551  T
Q  101 atcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6353552 atcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctc 6353651  T
Q  201 tccagttccatctcctctt 219  Q
    |||||||||||||||||||    
T  6353652 tccagttccatctcctctt 6353670  T

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Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 6290420 - 6290578
Alignment:
Q  61 ctgccggttcttccccttcgagggtaagggaaatcgctcgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcattgt 160  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6290420 ctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacctaaatcattgt 6290519  T
Q  161 agacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  6290520 agacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctctt 6290578  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 219
Target Start/End: Original strand, 6425200 - 6425360
Alignment:
Q  59 ttctgccggttcttccccttcgagggtaagggaaatcgctcgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcatt 158  Q
    ||||||| ||||| ||||||||||||||||| ||   ||||||||| ||||||| | ||||  ||||   ||||||||||||||||||||||||||||||    
T  6425200 ttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgacccaaggtaggtttcgagtcaggctcacccaaatcatt 6425299  T
Q  159 gtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    |||||||||||||||||| || || ||||||||||||||||||||  ||||||||||||||    
T  6425300 gtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctctt 6425360  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 6364469 - 6364543
Alignment:
Q  145 tcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  6364469 tcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctctt 6364543  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 7460552 - 7460742
Alignment:
Q  29 tgtttgtagcctaacctgttttagtttttcttctgccggttcttccccttcgagggtaagggaaatcgctcgatcccccaagaatttgacgcgccaattg 128  Q
    |||||| |||||||||| |||||| |  | ||||||||||||||||||||||||||||||| || |  |  | ||| |||  ||   |||| |||||       
T  7460552 tgtttggagcctaaccttttttagatggttttctgccggttcttccccttcgagggtaaggcaagtttccaggtcctccagcaacaggacgagccaagct 7460651  T
Q  129 aggtttcgagtcaggctcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    || ||||  ||| || |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  7460652 agctttctggtcgggatcacccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctctt 7460742  T

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Target: chr8; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 6392094 - 6392166
Alignment:
Q  147 acccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  6392094 acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctctt 6392166  T

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Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 6411258 - 6411330
Alignment:
Q  147 acccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    ||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  6411258 acccaaatcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctctt 6411330  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 6371300 - 6371374
Alignment:
Q  145 tcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| || |||||||||||||||    
T  6371300 tcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctctt 6371374  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 6275745 - 6275826
Alignment:
Q  138 gtcaggctcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    |||||| ||||||| |||||||||||||||||| ||||| || || |||||||| || |||||||| |||||||||||||||    
T  6275745 gtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctctt 6275826  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 6264927 - 6265001
Alignment:
Q  145 tcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    ||||||||||||||||| ||||| |||||||| | ||| |||||||| |||||||| || |||||||||||||||    
T  6264927 tcacccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctctt 6265001  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 6333173 - 6333254
Alignment:
Q  138 gtcaggctcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    |||||| |||||||| |||||||| |||||||| ||||| || |||||| |||| |||||||| || |||||||||||||||    
T  6333173 gtcaggatcacccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctctt 6333254  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 6322606 - 6322687
Alignment:
Q  138 gtcaggctcacccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    |||||| |||||||| |||||||| |||||||| ||||| ||||||||   |||||||||||  || |||||||||||||||    
T  6322606 gtcaggatcacccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctctt 6322687  T

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Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 6458262 - 6458333
Alignment:
Q  148 cccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    ||||||||||| || | ||| |||||||| | |||||||  ||| |||||||||||||||||||||||||||    
T  6458262 cccaaatcattataaatatcataatcataaactctatccgcttctttgcgctctccagttccatctcctctt 6458333  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 6452174 - 6452240
Alignment:
Q  153 atcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    |||||| || ||||| ||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  6452174 atcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctctt 6452240  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 42694394 - 42694462
Alignment:
Q  151 aaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    ||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||    
T  42694394 aaatcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctctt 42694462  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 36744021 - 36743954
Alignment:
Q  148 cccaaatcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcc 215  Q
    |||||||||||||| ||||| |||||||| ||||| ||||||||||  |||| | | |||||||||||    
T  36744021 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctcc 36743954  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 9603168 - 9603102
Alignment:
Q  153 atcattgtagacatcgtaatcatatattctatcccattccttgcgctctccagttccatctcctctt 219  Q
    ||||||||||||||| |||||||| | ||| |||||||| || || | |||||| ||||||||||||    
T  9603168 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctctt 9603102  T

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