View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_64 (Length: 215)
Name: NF1706_low_64
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 41 - 211
Target Start/End: Complemental strand, 54986129 - 54985959
Alignment:
| Q |
41 |
agagataatatggagagacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacat |
140 |
Q |
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| T |
54986129 |
agagataatatggagagacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacat |
54986030 |
T |
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| Q |
141 |
tggatatcatagcccccataaaccctgaaacgtagataagatcagtcaaacaaaatacagattcagcatcc |
211 |
Q |
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| T |
54986029 |
tggatatcatagcccccataaaccctgaaacatagataagatcagtcaaacaaaatacagattcagcatcc |
54985959 |
T |
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Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 7883625 - 7883510
Alignment:
| Q |
56 |
agacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatagccc |
155 |
Q |
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||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||||| | |
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| T |
7883625 |
agacaagcataatagttcattccactaacactcattccattcattcctttctttgagaatatattcctaaatacaaatgccaaatttgatatcatagctc |
7883526 |
T |
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| Q |
156 |
ccataaaccctgaaac |
171 |
Q |
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| T |
7883525 |
ccataaatcctgaaac |
7883510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 18396645 - 18396534
Alignment:
| Q |
58 |
acaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatagccccc |
157 |
Q |
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|||||||||||| |||||||||||||||||| |||| ||||| ||||| || ||||| || || | |||||||| |||| ||| ||||||||||||||| |
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| T |
18396645 |
acaagcatagtaattcattccactaacagactttcccttcatcccctttttcgagaagatgttgcggaacacaaatgccagatttgatatcatagccccc |
18396546 |
T |
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| Q |
158 |
ataaaccctgaa |
169 |
Q |
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||||| |||||| |
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| T |
18396545 |
ataaaacctgaa |
18396534 |
T |
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