View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_8 (Length: 505)
Name: NF1706_low_8
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 489
Target Start/End: Complemental strand, 35076744 - 35076301
Alignment:
| Q |
11 |
cacagacacacgtgtgagctgctacaaaattatggtacggctgataaggaaacattattactgaaaaagtacatcatgaccatgacactt-atgaaattc |
109 |
Q |
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| T |
35076744 |
cacagacacacgtgtgagctgctacaaaattatggtacggatgataaggaaacattattattgaaaaagtacatcatgaccatgacactttatgaaattc |
35076645 |
T |
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| Q |
110 |
cacactgctatatactattactagtttagtttacttcaaattttgtatatcgatctagcttgcgacaaatatcttcttctcaaataaaatactatgcatc |
209 |
Q |
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| T |
35076644 |
ca-------------tattactaatttagtttacttcaaattttgtatatcgatctagcttgcgacaaatatcttcttctcaaataaaatactatgcatc |
35076558 |
T |
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| Q |
210 |
tgcgcacgttctcatgaaaatcagaagccactagtaataaagtaaacacgaattcatcaaataatcaaatctcaatcataatccatgtttgaattatttt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35076557 |
tgcgcacgttctcatgaaaatcagaagccactagtaataaaataaacacgaattcatcaaataatcaaatctcaatcataatccatgtttgaattatttt |
35076458 |
T |
|
| Q |
310 |
aaactactcaatagtcaattctgctctattgtannnnnnnactaacacttactccagaacgtggtgcgcaagtaacatcatagatacgagaggcagaatc |
409 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35076457 |
aaactact---------------ctctattgtatttttttactaacacttactccagaacgtggtgcgcaagtaacatcatagatacgagaggcagaatc |
35076373 |
T |
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| Q |
410 |
agaatgattattttttcttcttctagatattgcaacccaagtaccctcattgaattgcacgtgctttgtagccaaattat |
489 |
Q |
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||||||| | ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35076372 |
agaatgaattttttt--------tagatattgcaacccacgtaccctcattgaattgcacgtgctttgtagccaaattat |
35076301 |
T |
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