View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_low_9 (Length: 496)

Name: NF1706_low_9
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_low_9
NF1706_low_9
[»] chr4 (28 HSPs)
chr4 (4-215)||(43868001-43868213)
chr4 (238-489)||(667701-667955)
chr4 (238-489)||(13567969-13568223)
chr4 (341-489)||(23543572-23543720)
chr4 (238-437)||(40976677-40976878)
chr4 (90-157)||(46344926-46344993)
chr4 (46-125)||(32818420-32818500)
chr4 (238-318)||(33110089-33110168)
chr4 (14-157)||(35064986-35065130)
chr4 (72-126)||(25319001-25319055)
chr4 (72-126)||(33560648-33560702)
chr4 (46-192)||(30472822-30472969)
chr4 (244-286)||(2947799-2947840)
chr4 (240-285)||(5660780-5660826)
chr4 (48-105)||(20718593-20718650)
chr4 (244-285)||(7780361-7780401)
chr4 (382-427)||(24630293-24630338)
chr4 (253-286)||(41372948-41372981)
chr4 (253-285)||(8103843-8103875)
chr4 (238-317)||(8847794-8847875)
chr4 (253-285)||(13004015-13004047)
chr4 (253-285)||(17456816-17456848)
chr4 (257-297)||(23543765-23543805)
chr4 (253-285)||(27590267-27590299)
chr4 (253-285)||(37368543-37368575)
chr4 (253-285)||(48914861-48914893)
chr4 (97-189)||(49138937-49139029)
chr4 (253-285)||(55463000-55463032)
[»] chr8 (31 HSPs)
chr8 (238-489)||(9906936-9907190)
chr8 (238-487)||(2268383-2268634)
chr8 (238-472)||(5064045-5064281)
chr8 (238-493)||(44245932-44246190)
chr8 (273-489)||(38657220-38657437)
chr8 (60-157)||(41318844-41318941)
chr8 (241-327)||(24220466-24220554)
chr8 (72-126)||(13418896-13418951)
chr8 (46-128)||(32927844-32927927)
chr8 (97-158)||(15677900-15677961)
chr8 (15-130)||(26100165-26100282)
chr8 (87-127)||(7533750-7533790)
chr8 (8-122)||(463125-463240)
chr8 (66-141)||(7720116-7720191)
chr8 (237-285)||(14393678-14393728)
chr8 (66-189)||(16972135-16972257)
chr8 (46-140)||(37684345-37684440)
chr8 (244-286)||(7934154-7934195)
chr8 (244-285)||(6464804-6464844)
chr8 (244-285)||(7311303-7311343)
chr8 (244-285)||(8013548-8013588)
chr8 (238-287)||(12538881-12538930)
chr8 (244-285)||(15012342-15012382)
chr8 (244-285)||(16710897-16710937)
chr8 (244-285)||(36005710-36005750)
chr8 (244-285)||(36075921-36075961)
chr8 (244-285)||(41242344-41242384)
chr8 (253-285)||(11358422-11358454)
chr8 (90-122)||(12742244-12742276)
chr8 (253-285)||(36022028-36022060)
chr8 (253-285)||(36425959-36425991)
[»] chr7 (32 HSPs)
chr7 (245-488)||(28442400-28442644)
chr7 (238-489)||(9701730-9701984)
chr7 (244-489)||(41454942-41455185)
chr7 (238-489)||(43364187-43364441)
chr7 (326-489)||(37521828-37521991)
chr7 (309-489)||(48455398-48455578)
chr7 (379-488)||(41542549-41542658)
chr7 (238-307)||(5222292-5222363)
chr7 (238-301)||(7413139-7413203)
chr7 (244-330)||(41542413-41542498)
chr7 (97-130)||(17111825-17111858)
chr7 (238-317)||(29865134-29865215)
chr7 (11-130)||(41386830-41386950)
chr7 (66-126)||(45004974-45005034)
chr7 (97-157)||(48158814-48158874)
chr7 (244-285)||(2446600-2446640)
chr7 (244-285)||(5056536-5056576)
chr7 (244-285)||(21901418-21901458)
chr7 (244-285)||(37026002-37026042)
chr7 (253-285)||(1378909-1378941)
chr7 (253-285)||(5050140-5050172)
chr7 (253-285)||(6021093-6021125)
chr7 (253-285)||(8142674-8142706)
chr7 (253-285)||(8185621-8185653)
chr7 (253-285)||(8193181-8193213)
chr7 (253-285)||(14287677-14287709)
chr7 (253-285)||(14298862-14298894)
chr7 (238-318)||(22909805-22909884)
chr7 (253-285)||(23612351-23612383)
chr7 (253-285)||(36875507-36875539)
chr7 (253-285)||(48347325-48347357)
chr7 (253-285)||(48353709-48353741)
[»] scaffold0265 (1 HSPs)
scaffold0265 (238-489)||(17798-18052)
[»] chr1 (32 HSPs)
chr1 (238-489)||(21814757-21815011)
chr1 (238-489)||(9315900-9316154)
chr1 (257-489)||(47293981-47294213)
chr1 (244-427)||(27041136-27041318)
chr1 (17-130)||(28083909-28084023)
chr1 (238-320)||(19329313-19329396)
chr1 (380-443)||(44785510-44785574)
chr1 (238-301)||(47646606-47646670)
chr1 (235-285)||(5357981-5358032)
chr1 (270-323)||(45620343-45620396)
chr1 (238-286)||(3365619-3365667)
chr1 (242-318)||(15162114-15162189)
chr1 (90-124)||(35961334-35961368)
chr1 (16-124)||(3016119-3016227)
chr1 (244-285)||(4599482-4599522)
chr1 (238-287)||(9293132-9293181)
chr1 (235-285)||(23251285-23251337)
chr1 (244-285)||(28413902-28413942)
chr1 (244-285)||(31072272-31072312)
chr1 (244-285)||(38672996-38673036)
chr1 (244-285)||(42091850-42091890)
chr1 (67-124)||(48507809-48507866)
chr1 (253-285)||(1116212-1116244)
chr1 (253-285)||(2825047-2825079)
chr1 (253-285)||(6238617-6238649)
chr1 (253-285)||(27240359-27240391)
chr1 (238-301)||(31473246-31473310)
chr1 (1-96)||(33733953-33734049)
chr1 (253-285)||(39053566-39053598)
chr1 (253-285)||(39059938-39059970)
chr1 (253-285)||(43686589-43686621)
chr1 (253-285)||(45015743-45015775)
[»] chr2 (30 HSPs)
chr2 (253-489)||(43669728-43669966)
chr2 (244-488)||(44611196-44611441)
chr2 (257-489)||(33033717-33033949)
chr2 (380-489)||(22600050-22600161)
chr2 (238-301)||(13162756-13162819)
chr2 (238-301)||(37439703-37439766)
chr2 (238-301)||(17784659-17784723)
chr2 (252-298)||(24853198-24853244)
chr2 (233-285)||(45700878-45700931)
chr2 (238-285)||(11910188-11910236)
chr2 (46-121)||(22535957-22536033)
chr2 (66-132)||(31453331-31453397)
chr2 (102-156)||(33502956-33503010)
chr2 (16-128)||(6327089-6327202)
chr2 (244-285)||(12950750-12950790)
chr2 (244-285)||(13902185-13902225)
chr2 (244-285)||(41455560-41455600)
chr2 (97-130)||(43501093-43501126)
chr2 (253-285)||(2157574-2157606)
chr2 (90-126)||(7630370-7630406)
chr2 (46-145)||(12036996-12037096)
chr2 (253-285)||(15852511-15852543)
chr2 (238-301)||(17789312-17789376)
chr2 (253-285)||(29484888-29484920)
chr2 (253-285)||(34835040-34835072)
chr2 (253-285)||(34841484-34841516)
chr2 (253-285)||(36782413-36782445)
chr2 (253-285)||(42931600-42931632)
chr2 (253-285)||(43267820-43267852)
chr2 (253-285)||(45011944-45011976)
[»] chr3 (30 HSPs)
chr3 (238-489)||(4501057-4501310)
chr3 (238-489)||(4506383-4506636)
chr3 (341-489)||(27900575-27900722)
chr3 (244-489)||(18866732-18866976)
chr3 (382-488)||(4675018-4675124)
chr3 (341-443)||(545918-546021)
chr3 (238-327)||(20628544-20628635)
chr3 (257-303)||(4674893-4674939)
chr3 (46-126)||(1441431-1441512)
chr3 (238-287)||(24899324-24899373)
chr3 (238-287)||(24905790-24905839)
chr3 (74-132)||(50321837-50321895)
chr3 (238-315)||(27900466-27900545)
chr3 (66-126)||(46943125-46943184)
chr3 (272-327)||(9331332-9331387)
chr3 (79-157)||(34331564-34331642)
chr3 (241-285)||(2785657-2785702)
chr3 (244-285)||(3577166-3577206)
chr3 (253-286)||(4590756-4590789)
chr3 (253-286)||(9570777-9570810)
chr3 (253-286)||(9577279-9577312)
chr3 (11-82)||(4401421-4401493)
chr3 (253-285)||(6036228-6036260)
chr3 (253-285)||(13014948-13014980)
chr3 (253-285)||(18341520-18341552)
chr3 (253-285)||(25893192-25893224)
chr3 (253-285)||(27502196-27502228)
chr3 (253-285)||(32746332-32746364)
chr3 (90-130)||(41596231-41596270)
chr3 (90-130)||(48410907-48410947)
[»] chr6 (31 HSPs)
chr6 (238-489)||(18765627-18765881)
chr6 (238-489)||(1051159-1051413)
chr6 (244-488)||(10800600-10800843)
chr6 (244-488)||(7825941-7826186)
chr6 (257-489)||(14118586-14118818)
chr6 (257-489)||(14122544-14122776)
chr6 (379-454)||(24908510-24908585)
chr6 (234-285)||(1167723-1167774)
chr6 (238-301)||(11015199-11015263)
chr6 (244-330)||(24908374-24908459)
chr6 (66-126)||(1485217-1485277)
chr6 (15-146)||(7280424-7280556)
chr6 (238-321)||(13105143-13105227)
chr6 (238-318)||(9517840-9517919)
chr6 (87-129)||(2008430-2008472)
chr6 (72-126)||(30926856-30926910)
chr6 (244-285)||(1428651-1428691)
chr6 (253-286)||(4186647-4186680)
chr6 (244-285)||(11058378-11058418)
chr6 (244-285)||(30117496-30117536)
chr6 (244-285)||(34711785-34711825)
chr6 (253-285)||(4020464-4020496)
chr6 (253-285)||(4026890-4026922)
chr6 (14-189)||(4910799-4910975)
chr6 (66-130)||(5724701-5724765)
chr6 (253-285)||(7062712-7062744)
chr6 (253-285)||(7069928-7069960)
chr6 (46-161)||(7952759-7952875)
chr6 (253-285)||(32328721-32328753)
chr6 (253-285)||(34648761-34648793)
chr6 (253-285)||(34655212-34655244)
[»] chr5 (26 HSPs)
chr5 (238-489)||(9335177-9335431)
chr5 (238-482)||(4694250-4694496)
chr5 (244-488)||(40821357-40821602)
chr5 (238-327)||(12919144-12919235)
chr5 (238-327)||(3413484-3413575)
chr5 (61-129)||(27374357-27374425)
chr5 (11-130)||(6951320-6951439)
chr5 (238-327)||(42729069-42729160)
chr5 (72-132)||(10898670-10898730)
chr5 (241-301)||(19853696-19853756)
chr5 (238-301)||(34738143-34738207)
chr5 (244-286)||(9843303-9843344)
chr5 (244-285)||(2438755-2438795)
chr5 (235-285)||(12506001-12506053)
chr5 (244-285)||(33794046-33794086)
chr5 (244-285)||(34357516-34357556)
chr5 (244-285)||(34359307-34359347)
chr5 (253-285)||(2957820-2957852)
chr5 (253-285)||(2966289-2966321)
chr5 (66-126)||(11648036-11648096)
chr5 (46-157)||(18851132-18851244)
chr5 (253-285)||(25894878-25894910)
chr5 (66-110)||(28031244-28031288)
chr5 (253-285)||(29980421-29980453)
chr5 (253-285)||(30041472-30041504)
chr5 (253-285)||(42150780-42150812)
[»] scaffold0012 (1 HSPs)
scaffold0012 (238-489)||(202340-202594)
[»] scaffold0291 (1 HSPs)
scaffold0291 (257-489)||(1736-1975)
[»] scaffold0045 (4 HSPs)
scaffold0045 (378-489)||(2768-2880)
scaffold0045 (378-489)||(9150-9262)
scaffold0045 (253-320)||(9320-9387)
scaffold0045 (253-320)||(2938-3005)
[»] scaffold0744 (1 HSPs)
scaffold0744 (244-285)||(6939-6979)
[»] scaffold0060 (1 HSPs)
scaffold0060 (244-285)||(15125-15165)
[»] scaffold0043 (1 HSPs)
scaffold0043 (244-285)||(5233-5273)
[»] scaffold0173 (1 HSPs)
scaffold0173 (253-285)||(24474-24506)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 8e-93; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 43868213 - 43868001
Alignment:
Q  4 tgacttaaattataaatttatatgtaaaaattaacttttgagtcaaaagctacaaatct-aatttcaaatagaatcaattgtaaagacaaaattaattct 102  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  43868213 tgacttaaattataaatttatatgtaaaaattaacttttgagttaaaagctacaaatcttaatttcaaatagaatcaattgtggagacaaaattaattct 43868114  T
Q  103 actcgaaagcaaccaaacatgtcagaattagttttacaacttcataatcaattttagccactttaaaagtagagcaagacatacacttaagcaagttatg 202  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  43868113 actagaaagcaaccaaacatgttagaattagttttacaacttcataatcaattttagccactctaaaagtagagccaaacatacacttaagcaagttatg 43868014  T
Q  203 tcatctaggtctt 215  Q
    |||||||||||||    
T  43868013 tcatctaggtctt 43868001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 238 - 489
Target Start/End: Complemental strand, 667955 - 667701
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatg 335  Q
    ||||||||||||||||||   ||| ||||||  |||||||| ||||||||||||| |||||||||||||||| ||||||| |||||| | ||||||| ||    
T  667955 atcaaaagtaagtatttttgttattgtctccatagggactgatgcgatattctaagccgttcaacaatcgatatcgttctgagctaatgattcgatattg 667856  T
Q  336 gtttctttcataaactatcaaactctgaaattataaaagatttgagagtt-aacagggaaatgattatgttgggattaaacttcatcaacctacttatat 434  Q
     ||| |||||| |||||| |||||  | | || ||| |||| |||||||| |||||||||||||||||| || ||||||||||||||||||||| ||||     
T  667855 ttttgtttcatgaactataaaactacggatttgtaagagatatgagagtttaacagggaaatgattatgctgagattaaacttcatcaacctacatatac 667756  T
Q  435 gtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    |||||||| |||||||||||||||||  | |||||||| ||||||||||||||||    
T  667755 gtattctcggattagtgttgtggattataattatcaattgatattatcacatatt 667701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 13567969 - 13568223
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat- 334  Q
    ||||||||||||||||||   |||  ||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||| || ||| |    | ||||     
T  13567969 atcaaaagtaagtatttttgttattatctccacagggactggtgcgatattctaagccgttcaacaatctatgttgttctgag-taatggagtggtaata 13568067  T
Q  335 -ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
     | ||| ||||||||||||  ||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  13568068 agttttgtttcataaactagaaaactatgaaatgataaaagatttgagagttaacagggaaatggttatgctgggattaaacttcatcaacctacgtata 13568167  T
Q  434 tgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
     |||||||  ||||||||||| |||||| | |||||||| ||||||||||||||||    
T  13568168 cgtattctaggattagtgttgcggattctaattatcaattgatattatcacatatt 13568223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 341 - 489
Target Start/End: Complemental strand, 23543720 - 23543572
Alignment:
Q  341 tttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattc 440  Q
    ||||||||||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || ||||||    
T  23543720 tttcataaactagaaaactatgaaattataaaatatttgagagttaacaggaaaatgattatgttgggattaaacttcatcaacctacgtgtacgtattc 23543621  T
Q  441 tcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    ||| || ||||||| |||||| | |||||||| | ||||||| ||||||    
T  23543620 tcatatcagtgttgcggattctaattatcaattgctattatcgcatatt 23543572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 238 - 437
Target Start/End: Complemental strand, 40976878 - 40976677
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat- 334  Q
    |||||||||||||||||    |||| ||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||| || ||| |    | ||||     
T  40976878 atcaaaagtaagtatttatgttatcttctccacagggactggtgcgatatt-taagccgttcaacaatctatatcgttctgag-taatggggtggtaata 40976781  T
Q  335 -ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
     | ||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  40976780 agttttgtttcataaactagaaaactatgaaattataaaagatttgagagttaacagggaaatggttatgctgggattaaacttcatcaacctacgtata 40976681  T
Q  434 tgta 437  Q
    ||||    
T  40976680 tgta 40976677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 46344926 - 46344993
Alignment:
Q  90 caaaattaattctactcgaaagcaaccaaacatgtcagaattagttttacaacttcataatcaatttt 157  Q
    |||||| |||| |||| |||||||||||||||||||||||||| || |||| || |||||||||||||    
T  46344926 caaaatcaattatacttgaaagcaaccaaacatgtcagaattaattatacacctccataatcaatttt 46344993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 32818420 - 32818500
Alignment:
Q  46 tcaaaagctacaaat-ctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtc 125  Q
    ||||||||||||||| |||  ||||||||||||||||| |  || |||||| ||||||||||||||| ||||||| |||||    
T  32818420 tcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaatcaattctactcgaaagaaaccaaatatgtc 32818500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 33110089 - 33110168
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaag 318  Q
    |||||||||||||||| |||||||||||| || ||||| | ||||||||| ||||| |||||||||| || | ||||||||    
T  33110089 atcaaaagtaagtattgtatatcgtctccacatggactagcgcgatattc-aaaccattcaacaatcaatattgttctaag 33110168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 35065130 - 35064986
Alignment:
Q  14 tataaatttatatgtaaaaattaacttttgagtcaaaagctacaaat-ctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagc 112  Q
    ||||||||| | ||||||||| || | | || |||||||  |||||| |||  ||||| || |||||||| |  || |||||| ||||||||||||||||    
T  35065130 tataaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaagtaaaatcaattattgaggcaaaatcaattctactcgaaagc 35065031  T
Q  113 aaccaaacatgtcagaattagttttacaacttcataatcaatttt 157  Q
    ||||||| |||||| ||| | || |||| || |||||||||||||    
T  35065030 aaccaaaaatgtcataatcaattctacacctccataatcaatttt 35064986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 25319055 - 25319001
Alignment:
Q  72 tagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtca 126  Q
    ||||||||||| |  ||||||||| |||||||||||| |||||||||||||||||    
T  25319055 tagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtca 25319001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 33560648 - 33560702
Alignment:
Q  72 tagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtca 126  Q
    ||||||||||| || || |||||| |||||||||||| |||||||||||||||||    
T  33560648 tagaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatgtca 33560702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 30472969 - 30472822
Alignment:
Q  46 tcaaaagctacaaat-ctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaattagttttacaactt 144  Q
    |||||| |||||||| |||| || || || |||||||| | |||| |||||||||||||||  | |||||  |||||||||| ||| | |||||||  ||    
T  30472969 tcaaaaactacaaattctaacttgaagtaaaatcaattttgaagataaaattaattctacttaagagcaagtaaacatgtcaaaatcaattttacatgtt 30472870  T
Q  145 cataatcaattttagccactttaaaagtagagcaagacatacacttaa 192  Q
     | ||||||||||| || || ||||||||||   | ||||||||||||    
T  30472869 tagaatcaattttaacctctctaaaagtagaattaaacatacacttaa 30472822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 2947799 - 2947840
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatatt 286  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  2947799 agtaagtattt-atatcgtctcctcagggactagtgcgatatt 2947840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 5660826 - 5660780
Alignment:
Q  240 caaaagtaagtattt-tatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  5660826 caaaagtaactatttatatatcgtctcctcagggactagtgcgatat 5660780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 20718650 - 20718593
Alignment:
Q  48 aaaagctacaaatc-taatttcaaatagaatcaattgtaaagacaaaattaattctact 105  Q
    |||||||||||||| ||| |||||||| |||||||| |||| |||||||||||||||||    
T  20718650 aaaagctacaaatcataaattcaaataaaatcaatt-taaaaacaaaattaattctact 20718593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 7780361 - 7780401
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  7780361 agtaagtattt-atatcgtctcctcagggactagtgcgatat 7780401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 24630338 - 24630293
Alignment:
Q  382 agttaacagggaaatgattatgttgggattaaacttcatcaaccta 427  Q
    ||||||||| ||  ||| ||||||||||||||||||||||||||||    
T  24630338 agttaacagagatgtgagtatgttgggattaaacttcatcaaccta 24630293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 41372948 - 41372981
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatatt 286  Q
    ||||||||||||||||||||||| ||||||||||    
T  41372948 tttatatcgtctcctcagggactagtgcgatatt 41372981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 8103843 - 8103875
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  8103843 tttatatcgtctcctcagggactagtgcgatat 8103875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 8847794 - 8847875
Alignment:
Q  238 atcaaaagtaagtattt---tatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaa 317  Q
    |||||||||||||||||   | |||||||||| || ||||| | ||||||||| || |||||||||||||| | |||||||||    
T  8847794 atcaaaagtaagtatttttgtgtatcgtctccacaaggactagcgcgatattc-aagccgttcaacaatcgttatcgttctaa 8847875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 13004047 - 13004015
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  13004047 tttatatcgtctcctcagggactagtgcgatat 13004015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 17456816 - 17456848
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  17456816 tttatatcgtctcctcagggactagtgcgatat 17456848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 23543805 - 23543765
Alignment:
Q  257 tatcgtctcctcagggactggtgcgatattctaaaccgttc 297  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  23543805 tatcgtctccacaggaactggtgcgatattctaagccgttc 23543765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 27590267 - 27590299
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  27590267 tttatatcgtctcctcagggactagtgcgatat 27590299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 37368575 - 37368543
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  37368575 tttatatcgtctcctcagggactagtgcgatat 37368543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 48914861 - 48914893
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  48914861 tttatatcgtctcctcagggactagtgcgatat 48914893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 49138937 - 49139029
Alignment:
Q  97 aattctactcgaaagcaaccaaacatgtcagaattagttttacaacttcataatcaattttagccactttaaaagtagagcaagacatacact 189  Q
    |||| |||| |||| ||||||||||||||||||| | || |||| ||  | |||||||||| ||||||||| |||| || | | |||||||||    
T  49138937 aattttacttgaaaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaacatacact 49139029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 55463032 - 55463000
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  55463032 tttatatcgtctcctcagggactagtgcgatat 55463000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 238 - 489
Target Start/End: Complemental strand, 9907190 - 9906936
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaag-tttcgataat 334  Q
    ||||||||||||||||||   |||||||||| || |||||||||||||||| ||| |||||||||||||||| | ||| | |||||| | |||||| | |    
T  9907190 atcaaaagtaagtatttttgttatcgtctccacatggactggtgcgatattataagccgttcaacaatcgatattgttatgagctaagggtttcgagatt 9907091  T
Q  335 ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatat 434  Q
    | ||| ||||||||||||  ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||     
T  9907090 gttttgtttcataaactagaaaactatgaaattataaaagatttgagatttaacagggaaatggttatgttgggattacacttcatcaacctacgtatac 9906991  T
Q  435 gtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||||    
T  9906990 gtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9906936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 238 - 487
Target Start/End: Complemental strand, 2268634 - 2268383
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatg 335  Q
    ||||||||||||||||||   ||||||||||  ||||||| |||||||||||||| |||||||||||||| | ||||||| |||||| | ||| ||| ||    
T  2268634 atcaaaagtaagtatttttgttatcgtctccatagggactagtgcgatattctaagccgttcaacaatcggtatcgttctgagctaaggattcaatattg 2268535  T
Q  336 gtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatg 435  Q
     ||| |||||| |||||| |||||  | | || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  2268534 ttttgtttcatgaactataaaactacggacttgtaagagatatgagagttaacagggaaatgattatgttgggattaaacttcatcaacctactcataca 2268435  T
Q  436 tattctcagattagtgttgtggattccatttatcaatcgatattatcacata 487  Q
    |||||||  ||||||||||  |||||||   |||||||||||||||||||||    
T  2268434 tattctcgaattagtgttgcagattccaaccatcaatcgatattatcacata 2268383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 238 - 472
Target Start/End: Complemental strand, 5064281 - 5064045
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatg 335  Q
    ||||||||||||||||||   |||||||| | |||||| |||||||||||||||| |||||||||||||| | ||||| | |||||| | ||||||| ||    
T  5064281 atcaaaagtaagtatttttgttatcgtcttcacagggattggtgcgatattctaagccgttcaacaatcggtatcgttatgagctaaggattcgatattg 5064182  T
Q  336 gtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatg 435  Q
     ||| |||||| |||||| |||||  | | || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| |    
T  5064181 ttttgtttcatgaactataaaactacggacttgtaagagatttgagagttaacagggaaatgattatgctgggattaaacttcatcaacctaaatatacg 5064082  T
Q  436 tattctcagattagtgttgtggattccatttatcaat 472  Q
    ||||||| ||||||||||| |||||| | ||||||||    
T  5064081 tattctcggattagtgttgcggattctaattatcaat 5064045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 238 - 493
Target Start/End: Complemental strand, 44246190 - 44245932
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat- 334  Q
    |||||||||||||||||    |||||||||| ||||||||||||||||||||||| ||||||||||||  || ||||| |  | ||| |    | ||||     
T  44246190 atcaaaagtaagtatttatgttatcgtctccacagggactggtgcgatattctaagccgttcaacaatatatatcgttatttg-taatggagtggtaata 44246092  T
Q  335 -ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
     | ||| ||||||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  44246091 agttttgtttcataaactagaaaactatgaaattataaaagatgtgagagttaacagggaaatgattatactgggattaaacttcatcaacctacatata 44245992  T
Q  434 tgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatattcttc 493  Q
     |||||||  ||||||||||| |||||| |  ||||||| ||||||||||||||||||||    
T  44245991 cgtattcttggattagtgttgcggattctaactatcaattgatattatcacatattcttc 44245932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 273 - 489
Target Start/End: Original strand, 38657220 - 38657437
Alignment:
Q  273 actggtgcgatattctaaa-ccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttctttcataaactatcaaactctgaaattataa 371  Q
    |||||||||||||||| || |||||||| ||||| | ||||||| |||||| | ||||||| || ||| ||||||||||||| |||||  | | || |||    
T  38657220 actggtgcgatattcttaagccgttcaataatcggtatcgttctgagctaaggattcgatattgttttgtttcataaactataaaactacggacttgtaa 38657319  T
Q  372 aagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcagattagtgttgtggattccatttatcaa 471  Q
     | || |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| |  ||||||||||| |||||| | |||||||    
T  38657320 gatatatgagagttaataggaaaatgattatgttgggattaaacttcatcaacctacatatatgtattttaggattagtgttgcggattctaattatcaa 38657419  T
Q  472 tcgatattatcacatatt 489  Q
    | ||||||||||||||||    
T  38657420 ttgatattatcacatatt 38657437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 41318844 - 41318941
Alignment:
Q  60 tctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaattagttttacaacttcataatcaatttt 157  Q
    ||||| ||||| ||||||||||| ||||| |||||| ||||||| ||||| ||||||||| |||| ||||||| || | || ||||| ||||||||||    
T  41318844 tctaacttcaagtagaatcaattttaaaggcaaaataaattctattcgaaggcaaccaaatatgttagaattaattctccaccttcaaaatcaatttt 41318941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 327
Target Start/End: Complemental strand, 24220554 - 24220466
Alignment:
Q  241 aaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagttt 327  Q
    |||||||||||||||   |||| |||||  || ||||||||||||||| ||| || ||||||||||||| ||||||||||||| |||||    
T  24220554 aaaagtaagtatttttattatcatctccatagagactggtgcgatattttaagccattcaacaatcgatatcgttctaagctatagttt 24220466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 13418896 - 13418951
Alignment:
Q  72 tagaatcaattgtaaagacaaaattaattctactcgaaagcaa-ccaaacatgtca 126  Q
    ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||    
T  13418896 tagaatcaattttgaagacaaaattaattctacttgaaagcaatccaaacatgtca 13418951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 32927927 - 32927844
Alignment:
Q  46 tcaaaagctacaaatc-taatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcaga 128  Q
    |||||||||||||||| ||  ||||| ||||||||| | |  || |||||| ||||||||| ||||||||||||||||||||||    
T  32927927 tcaaaagctacaaatcctagcttcaagtagaatcaactattgaggcaaaatcaattctactggaaagcaaccaaacatgtcaga 32927844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 15677900 - 15677961
Alignment:
Q  97 aattctactcgaaagcaaccaaacatgtcagaattagttttacaacttcataatcaatttta 158  Q
    ||||||| | |||||||||||||||||||||||| | || ||||||| || |||||||||||    
T  15677900 aattctatttgaaagcaaccaaacatgtcagaatcaattgtacaactccacaatcaatttta 15677961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 26100165 - 26100282
Alignment:
Q  15 ataaatttatatgtaaaaattaacttttgagtcaaaagctacaaatc-taatttcaaatagaatcaattgtaaagacaaaatt-aattctactcgaaagc 112  Q
    |||||||| | ||||||||| || | | || |||||||||||||||| ||  ||||||||||| ||||| || |||| ||| | ||||||||| | ||||    
T  26100165 ataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagaccaaagtcaattctacttggaagc 26100264  T
Q  113 aaccaaacatgtcagaat 130  Q
    |||||||||||| |||||    
T  26100265 aaccaaacatgttagaat 26100282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 7533790 - 7533750
Alignment:
Q  87 agacaaaattaattctactcgaaagcaaccaaacatgtcag 127  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  7533790 agacaaaatcaattctacttgaaagcaaccaaacatgtcag 7533750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 463125 - 463240
Alignment:
Q  8 ttaaattataaatttatatgtaaaaattaacttttgagtcaaaagctacaaatctaa-tttcaaatagaatcaattgtaaagacaaaattaattctactc 106  Q
    ||||| ||||||||| | ||| ||||| || | | || ||| || |||||||||| | ||||||||||||| |||| |||| ||||||| |||||||||     
T  463125 ttaaactataaatttctttgtgaaaataaattctagaatcataaactacaaatcttagtttcaaatagaattaattctaaaaacaaaatcaattctacta 463224  T
Q  107 gaaagcaaccaaacat 122  Q
    || | |||||||||||    
T  463225 gacaacaaccaaacat 463240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 7720191 - 7720116
Alignment:
Q  66 ttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaattagttttacaa 141  Q
    ||||||||||||||||| |  ||||||||| |||| |||||||||| ||||||| ||| || ||| |||| |||||    
T  7720191 ttcaaatagaatcaattttgtagacaaaatcaattatactcgaaagtaaccaaatatgacaaaatcagttctacaa 7720116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 14393678 - 14393728
Alignment:
Q  237 gatcaaaagtaagtattttat--atcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||| |||  |||||||||||||||||| |||||||||    
T  14393678 gatcaaaagtaagtattgtatgtatcgtctcctcagggactagtgcgatat 14393728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 16972135 - 16972257
Alignment:
Q  66 ttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaattagttttacaacttcataatcaattttagccactt 165  Q
    |||||||| |||||| | | ||| |||||| |||||||||||| |||| |||| |||||| |||| | || |||||||| | |||||| ||| ||| |||    
T  16972135 ttcaaatacaatcaactctgaaggcaaaatcaattctactcgatagcatccaatcatgtctgaatcaattctacaactt-aaaatcaaatttggcctctt 16972233  T
Q  166 taaaagtagagcaagacatacact 189  Q
    || ||||||| | | |||||||||    
T  16972234 tagaagtagaaccaaacatacact 16972257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 37684440 - 37684345
Alignment:
Q  46 tcaaaagctacaaatc-taatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaattagttttaca 140  Q
    |||||||| ||||||| ||| ||||| ||||||||||| |  ||||||||| |||||||||| | | ||||||||||| || |||| | |||||||    
T  37684440 tcaaaagccacaaatcctaacttcaagtagaatcaattctggagacaaaatcaattctactccacaacaaccaaacatttcggaatcaattttaca 37684345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 7934195 - 7934154
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatatt 286  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  7934195 agtaagtattt-atatcgtctcctcagggactagtgcgatatt 7934154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 6464844 - 6464804
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  6464844 agtaagtattt-atatcgtctcctcagggactagtgcgatat 6464804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 7311303 - 7311343
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  7311303 agtaagtattt-atatcgtctcctcagggactagtgcgatat 7311343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 8013588 - 8013548
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  8013588 agtaagtattt-atatcgtctcctcagggactagtgcgatat 8013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 12538930 - 12538881
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatattc 287  Q
    |||||||||||||||| |||||||||||| ||| |||| | |||||||||    
T  12538930 atcaaaagtaagtattgtatatcgtctccccagagactagcgcgatattc 12538881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 15012342 - 15012382
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  15012342 agtaagtattt-atatcgtctcctcagggactagtgcgatat 15012382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 16710937 - 16710897
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  16710937 agtaagtattt-atatcgtctcctcagggactagtgcgatat 16710897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 36005750 - 36005710
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  36005750 agtaagtattt-atatcgtctcctcagggactagtgcgatat 36005710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 36075921 - 36075961
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  36075921 agtaagtattt-atatcgtctcctcagggactagtgcgatat 36075961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 41242384 - 41242344
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  41242384 agtaagtattt-atatcgtctcctcagggactagtgcgatat 41242344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 11358454 - 11358422
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  11358454 tttatatcgtctcctcagggactagtgcgatat 11358422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 12742276 - 12742244
Alignment:
Q  90 caaaattaattctactcgaaagcaaccaaacat 122  Q
    |||||| ||||||||||||||||||||||||||    
T  12742276 caaaatcaattctactcgaaagcaaccaaacat 12742244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 36022060 - 36022028
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  36022060 tttatatcgtctcctcagggactagtgcgatat 36022028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 36425991 - 36425959
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  36425991 tttatatcgtctcctcagggactagtgcgatat 36425959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 245 - 488
Target Start/End: Original strand, 28442400 - 28442644
Alignment:
Q  245 gtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttct-tt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| | ||    
T  28442400 gtaagtattttatatcgtctcctcagggactggtgcgatattctaagcagttcaacaatcgatgtcgttctgagctaaagtttcgataatggtttttgtt 28442499  T
Q  344 cataaactatcaaact-ctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctc 442  Q
    ||||||||||  |||| | ||||   |||| |    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  28442500 cataaactatagaactacagaaa-ggtaaatgggacgagagttaacagggaaatgattatgttgggattaaacttcatcaacctattcatatgtattctc 28442598  T
Q  443 agattagtgttgtggattccatttatcaatcgatattatcacatat 488  Q
     |||||||||||   ||   | |||||||| |||||||||||||||    
T  28442599 ggattagtgttgcatatcttaattatcaattgatattatcacatat 28442644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 9701730 - 9701984
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat- 334  Q
    ||||||||||||||||||   |||  ||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||| || ||| |    | ||||     
T  9701730 atcaaaagtaagtatttttgttattatctccacagggactggtgcgatattctaagccgttcaacaatctatgttgttctgag-taatggagtggtaata 9701828  T
Q  335 -ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
     | ||| ||||||||||||  ||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  9701829 agttttgtttcataaactagaaaactatgaaatgataaaagatttgagagttaacagggaaatggttatgctgggattaaacttcatcaacctacgtata 9701928  T
Q  434 tgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
     |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||||    
T  9701929 cgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9701984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 244 - 489
Target Start/End: Complemental strand, 41455185 - 41454942
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttcttt 343  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||| | ||||||| |||||| | ||| ||| || ||| | |    
T  41455185 agtaagtattt-atatcgtctcctcagggactgatgcaatattctaagccgttcaacaatcggtatcgttctgagctaaggattcaatattgttttgtct 41455087  T
Q  344 cataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctca 443  Q
    ||| |||||| |||||  | | || ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||      
T  41455086 catgaactat-aaactaaggacttgtaagagatatgagagttaacatggaaatgattatgttgggattaaacttcatcaacctacatatacgtattctag 41454988  T
Q  444 gattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    ||||| ||||| |||||| | |||||||| ||||||||||||||||    
T  41454987 gattaatgttgcggattctaattatcaattgatattatcacatatt 41454942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 43364187 - 43364441
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat- 334  Q
    |||||||||||||||||    |||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||| || ||| |    | ||||     
T  43364187 atcaaaagtaagtatttatgttatcgtctccacagggactggtgcgatattctaagccgttcaacaatctatatcgttctgag-taatggagtggtaata 43364285  T
Q  335 -ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
     | ||| ||||||||||||  ||||| |||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||    
T  43364286 agttttgtttcataaactagaaaactatgaaattataaaagatttgagagttaacagagaaatgatgatgctgggattaaacttcatcaacctacgtata 43364385  T
Q  434 tgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
     ||| |||  ||||||||||| |||||| | |||||||  ||||||||||||||||    
T  43364386 cgtactcttggattagtgttgcggattctaattatcaagtgatattatcacatatt 43364441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 326 - 489
Target Start/End: Original strand, 37521828 - 37521991
Alignment:
Q  326 ttcgataatggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacc 425  Q
    ||||||| || ||| |||||| |||||| |||||  | | || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37521828 ttcgatattgttttgtttcatgaactataaaactacggacttgtaagagatttgagagttaacacggaaatgattatgttgggattaaacttcatcaacc 37521927  T
Q  426 tacttatatgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    |||| ||| ||||| || ||||||||||| ||||||||   |||||||||||||||||||||||    
T  37521928 tactcatacgtattttcggattagtgttgcggattccaaccatcaatcgatattatcacatatt 37521991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 309 - 489
Target Start/End: Original strand, 48455398 - 48455578
Alignment:
Q  309 tcgttctaagctaaagtttcgataatggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttggg 408  Q
    ||||||| |||||| | ||||||| || ||| |||||| |||||| |||||    | |||||| ||||||||||||||||||||||||||||||| ||||    
T  48455398 tcgttctgagctaaggattcgatattgttttgtttcatgaactataaaactacagacttataagagatttgagagttaacagggaaatgattatgctggg 48455497  T
Q  409 attaaacttcatcaacctacttatatgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    |||||||||||||||||||  |||| |||||||| |||||||| || |||||| | ||||| || ||||||||||||||||    
T  48455498 attaaacttcatcaacctaaatatacgtattctcggattagtgatgcggattctaattatcgattgatattatcacatatt 48455578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 379 - 488
Target Start/End: Original strand, 41542549 - 41542658
Alignment:
Q  379 gagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcagattagtgttgtggattccatttatcaatcgatat 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||  ||| | | |||||||| |||||    
T  41542549 gagagttaacagggaaatgattatgttgggattaaacttcatcaacctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatat 41542648  T
Q  479 tatcacatat 488  Q
    ||||||||||    
T  41542649 tatcacatat 41542658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 5222292 - 5222363
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgat 307  Q
    ||||||||||||||||||   |||||||||| ||||||||||||||||||||||| || |||||||||||||    
T  5222292 atcaaaagtaagtatttttgttatcgtctccacagggactggtgcgatattctaagccattcaacaatcgat 5222363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 7413203 - 7413139
Alignment:
Q  238 atcaaaagtaagtatt-ttatatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    |||||||||||||||| || ||||||||||||||||||| ||| |||||  ||||||||||||||    
T  7413203 atcaaaagtaagtattgttgtatcgtctcctcagggactagtgtgatatcataaaccgttcaaca 7413139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 41542413 - 41542498
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcga 330  Q
    ||||||||||| ||||||||||| |||| | ||||||||||||||||  |||||||||||  || ||||||| |||||  |||||||    
T  41542413 agtaagtattt-atatcgtctccacaggaattggtgcgatattctaagtcgttcaacaattaatatcgttctgagctagggtttcga 41542498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 17111858 - 17111825
Alignment:
Q  97 aattctactcgaaagcaaccaaacatgtcagaat 130  Q
    ||||||||||||||||||||||||||||||||||    
T  17111858 aattctactcgaaagcaaccaaacatgtcagaat 17111825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 29865215 - 29865134
Alignment:
Q  238 atcaaaagtaagtatttta---tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaa 317  Q
    ||||||||||||||||||    |||||||||| || ||||| ||||||||||| ||  ||||||||||||||| |||||||||    
T  29865215 atcaaaagtaagtatttttgtgtatcgtctccacatggactagtgcgatattc-aagtcgttcaacaatcgatatcgttctaa 29865134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 41386830 - 41386950
Alignment:
Q  11 aattataaatttatatgtaaaaattaacttttgagtcaaaagctacaaatc-taatttcaaatagaatcaattgtaaagacaaaattaattctactcgaa 109  Q
    |||||||||||| | |||||| || || | | || | |||||||||||||| ||  ||||| ||||||||||| | |||   |||| |||| ||||||||    
T  41386830 aattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctgaaggtgaaatcaattatactcgaa 41386929  T
Q  110 agcaaccaaacatgtcagaat 130  Q
    ||||| |||||||||||||||    
T  41386930 agcaatcaaacatgtcagaat 41386950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 45005034 - 45004974
Alignment:
Q  66 ttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtca 126  Q
    ||||| ||||||||||| | ||| |||||| ||||||| |||| |||||||||||||||||    
T  45005034 ttcaagtagaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaacatgtca 45004974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 48158874 - 48158814
Alignment:
Q  97 aattctactcgaaagcaaccaaacatgtcagaattagttttacaacttcataatcaatttt 157  Q
    |||| ||||||| ||||||||||||||||| ||| | ||||||  ||||||||||||||||    
T  48158874 aattttactcgagagcaaccaaacatgtcaaaatcaattttacgccttcataatcaatttt 48158814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 2446600 - 2446640
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  2446600 agtaagtattt-atatcgtctcctcagggactagtgcgatat 2446640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 5056576 - 5056536
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  5056576 agtaagtattt-atatcgtctcctcagggactagtgcgatat 5056536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 21901458 - 21901418
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  21901458 agtaagtattt-atatcgtctcctcagggactagtgcgatat 21901418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 37026002 - 37026042
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  37026002 agtaagtattt-atatcgtctcctcagggactagtgcgatat 37026042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 1378909 - 1378941
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  1378909 tttatatcgtctcctcagggactagtgcgatat 1378941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 5050172 - 5050140
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  5050172 tttatatcgtctcctcagggactagtgcgatat 5050140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 6021125 - 6021093
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  6021125 tttatatcgtctcctcagggactagtgcgatat 6021093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 8142706 - 8142674
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  8142706 tttatatcgtctcctcagggactagtgcgatat 8142674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 8185653 - 8185621
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  8185653 tttatatcgtctcctcagggactagtgcgatat 8185621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 8193213 - 8193181
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  8193213 tttatatcgtctcctcagggactagtgcgatat 8193181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 14287677 - 14287709
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  14287677 tttatatcgtctcctcagggactagtgcgatat 14287709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 14298862 - 14298894
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  14298862 tttatatcgtctcctcagggactagtgcgatat 14298894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 22909884 - 22909805
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaag 318  Q
    |||||||||||||||| |||||| ||||| |||||||| | | ||||||| || || |||||||||| || | ||||||||    
T  22909884 atcaaaagtaagtattgtatatcatctccacagggactagcgtgatattc-aagccattcaacaatcaatattgttctaag 22909805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 23612351 - 23612383
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  23612351 tttatatcgtctcctcagggactagtgcgatat 23612383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 36875507 - 36875539
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  36875507 tttatatcgtctcctcagggactagtgcgatat 36875539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 48347357 - 48347325
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  48347357 tttatatcgtctcctcagggactagtgcgatat 48347325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 48353741 - 48353709
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  48353741 tttatatcgtctcctcagggactagtgcgatat 48353709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 238 - 489
Target Start/End: Complemental strand, 18052 - 17798
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat- 334  Q
    ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||  ||||||||||||| || | ||||| || ||| |    | ||||     
T  18052 atcaaaagtaagttttttagttatcgtctccacagggactggtgcgatattctacgccgttcaacaatctatattgttctgag-taatggagtggtaata 17954  T
Q  335 -ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
     | ||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  17953 agttttgtttcataaactagaaaactatgaaattataaaagatttgagagttaacagggaaatgattatgctgggattaaacttcatcaatctacgtata 17854  T
Q  434 tgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
     |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||||    
T  17853 cgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 17798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 21814757 - 21815011
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat- 334  Q
    ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||  ||||||||||||| || | ||||| || ||| |    | ||||     
T  21814757 atcaaaagtaagttttttagttatcgtctccacagggactggtgcgatattctacgccgttcaacaatctatattgttctgag-taatggagtggtaata 21814855  T
Q  335 -ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
     | ||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  21814856 agttttgtttcataaactagaaaactatgaaattataaaagatttgagagttaacagggaaatgattatgctgggattaaacttcatcaatctacgtata 21814955  T
Q  434 tgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
     |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||||    
T  21814956 cgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 21815011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 9315900 - 9316154
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaa---agtttcgata 332  Q
    |||||||||||||||||    |||||||||| ||||||||| |||||||||||||  |||||||||||| || ||||||| || |||   |||    |||    
T  9315900 atcaaaagtaagtatttatgttatcgtctccacagggactgatgcgatattctaagtcgttcaacaatctatatcgttctgag-taattgagtggtaata 9315998  T
Q  333 atggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttat 432  Q
    | | |||  |||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||    
T  9315999 a-gttttggttcataaactagaaaactatgaaattataaaagatttgagagttaacagggaaatgattatgctgagattaaacttcatcaacctacgtat 9316097  T
Q  433 atgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    | |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||||    
T  9316098 acgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9316154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 257 - 489
Target Start/End: Original strand, 47293981 - 47294213
Alignment:
Q  257 tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttctttcataaactatcaa 356  Q
    |||||||||| || | |||| || |||||||||| |||||||||||||| | ||||||| |||||| | ||||||| || ||| |||||| |||||| ||    
T  47293981 tatcgtctccacatgaactgatgtgatattctaagccgttcaacaatcggtatcgttctgagctaaggattcgatactgttttgtttcatgaactataaa 47294080  T
Q  357 actctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcagattagtgttgtg 456  Q
    |||  | | || | | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||| |||||||||||| |    
T  47294081 actacggacttgtgagagatatgagagttaacagggaaatgattatgttgagattaaacttcatcgacctacatatacgtattctaagattagtgttgcg 47294180  T
Q  457 gattccatttatcaatcgatattatcacatatt 489  Q
     |||| | |||||||| ||||||||||||||||    
T  47294181 aattctaattatcaattgatattatcacatatt 47294213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 427
Target Start/End: Original strand, 27041136 - 27041318
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttcttt 343  Q
    ||||||||||| ||||||||||| |||||| ||||| |||||||||  ||||||||||||  || ||  ||| |||||  ||| ||| | || |||  ||    
T  27041136 agtaagtattt-atatcgtctccacagggattggtgtgatattctaggccgttcaacaattcatatcaatctgagctagggttgcgaaattgttttggtt 27041234  T
Q  344 cataaactatcaaact-ctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaaccta 427  Q
    |||||||||| ||||| | ||||   |||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27041235 cataaactataaaactacagaaacg-taaatgggatgagagttaacagggaaatgattatgttgggattaaacttcatcaaccta 27041318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 28083909 - 28084023
Alignment:
Q  17 aaatttatatgtaaaaattaacttttgagtcaaaagctacaaat-ctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaac 115  Q
    |||||| | |||||||||||| | | || ||||||||||||||| |||  ||||| |||||||||||   |||||||||| |||||||||||||| ||||    
T  28083909 aaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactcgaaaacaac 28084008  T
Q  116 caaacatgtcagaat 130  Q
    |||| ||||||||||    
T  28084009 caaatatgtcagaat 28084023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 19329313 - 19329396
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagct 320  Q
    ||||||||||||||||||   |||||||||| |||||||||||||||||||| || |||||||||||||||| | ||||||||||    
T  19329313 atcaaaagtaagtatttttgctatcgtctccacagggactggtgcgatattc-aagccgttcaacaatcgatattgttctaagct 19329396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 44785510 - 44785574
Alignment:
Q  380 agagttaacagggaaatgattatgttgggattaaacttcatcaacct-acttatatgtattctca 443  Q
    ||||| |||| |||||||| |||| |||||||||||||||||||||| |||||||||||||||||    
T  44785510 agagtaaacacggaaatgaatatgctgggattaaacttcatcaacctaacttatatgtattctca 44785574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 47646606 - 47646670
Alignment:
Q  238 atcaaaagtaagtatttta-tatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||  ||||||||||||||    
T  47646606 atcaaaagtaagtatttttgtatcgtctcctcagggactagtgcgatatcgtaaaccgttcaaca 47646670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 5358032 - 5357981
Alignment:
Q  235 acgatcaaaagtaagtattt-tatatcgtctcctcagggactggtgcgatat 285  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  5358032 acgattaaaagtaagtatttatatatcgtctcctcagggactagtgcgatat 5357981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 45620396 - 45620343
Alignment:
Q  270 gggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaa 323  Q
    ||||||| ||||||||||||| |||||||||||| ||| |||||||||| ||||    
T  45620396 gggactgatgcgatattctaagccgttcaacaattgatatcgttctaagttaaa 45620343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 3365619 - 3365667
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatatt 286  Q
    |||||||||||||||| |||||||||||| |||||||| | ||||||||    
T  3365619 atcaaaagtaagtattgtatatcgtctccacagggactagcgcgatatt 3365667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 15162189 - 15162114
Alignment:
Q  242 aaagtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaag 318  Q
    |||||||||||| |||||||||||| |||||||| | ||||||||| || || |||||||||| || | ||||||||    
T  15162189 aaagtaagtattgtatatcgtctccacagggactagcgcgatattc-aagccattcaacaatcaatattgttctaag 15162114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 35961368 - 35961334
Alignment:
Q  90 caaaattaattctactcgaaagcaaccaaacatgt 124  Q
    ||||||||||| |||||||||||||||||||||||    
T  35961368 caaaattaattttactcgaaagcaaccaaacatgt 35961334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 3016227 - 3016119
Alignment:
Q  16 taaatttatatgtaaaaattaacttttgagtcaaaagctacaaat-ctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaa 114  Q
    ||||||||| |||||| || || | | || ||||||||||||||| |||| ||||| ||||||||||| ||||| |||||| ||||||| |  ||| |||    
T  3016227 taaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaatcaattataaag-caaaatcaattctattaaaaaacaa 3016129  T
Q  115 ccaaacatgt 124  Q
    ||||| ||||    
T  3016128 ccaaatatgt 3016119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 4599482 - 4599522
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  4599482 agtaagtattt-atatcgtctcctcagggactagtgcgatat 4599522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 9293181 - 9293132
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatattc 287  Q
    |||||||||||||||| ||||||||||||  ||||||| | |||||||||    
T  9293181 atcaaaagtaagtattgtatatcgtctccatagggactagcgcgatattc 9293132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 23251285 - 23251337
Alignment:
Q  235 acgatcaaaagtaagtattttat--atcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||| |||  ||||||||||||||||||  ||||||||    
T  23251285 acgatcaaaagtaagtattgtatgtatcgtctcctcagggactattgcgatat 23251337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 28413942 - 28413902
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  28413942 agtaagtattt-atatcgtctcctcagggactagtgcgatat 28413902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 31072272 - 31072312
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  31072272 agtaagtattt-atatcgtctcctcagggactagtgcgatat 31072312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 38673036 - 38672996
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  38673036 agtaagtattt-atatcgtctcctcagggactagtgcgatat 38672996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 42091850 - 42091890
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  42091850 agtaagtattt-atatcgtctcctcagggactagtgcgatat 42091890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 48507809 - 48507866
Alignment:
Q  67 tcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgt 124  Q
    ||||||| |||||||| |||||||||||| |||| ||||| ||||||| |||| ||||    
T  48507809 tcaaataaaatcaattttaaagacaaaataaattatactcaaaagcaatcaaatatgt 48507866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 1116244 - 1116212
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  1116244 tttatatcgtctcctcagggactagtgcgatat 1116212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 2825079 - 2825047
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  2825079 tttatatcgtctcctcagggactagtgcgatat 2825047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 6238617 - 6238649
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  6238617 tttatatcgtctcctcagggactagtgcgatat 6238649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 27240391 - 27240359
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  27240391 tttatatcgtctcctcagggactagtgcgatat 27240359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 31473246 - 31473310
Alignment:
Q  238 atcaaaagtaagtatttt-atatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    |||||||||||||||||| |||| || ||| |||||||| |||| ||||  ||||||||||||||    
T  31473246 atcaaaagtaagtatttttatattgtttccacagggactagtgccatatcataaaccgttcaaca 31473310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 33734049 - 33733953
Alignment:
Q  1 aaatgacttaaattataaatttatatgtaaaaattaacttttgagtcaaaagctacaaa-tctaatttcaaatagaatcaattgtaaagacaaaatt 96  Q
    |||||| ||||||||||||||||| ||||||||| ||   | || ||||||| || ||| ||||| || ||||| |||||||| | |||||||||||    
T  33734049 aaatgaattaaattataaatttatgtgtaaaaatcaatgctcgaatcaaaagttaaaaattctaactttaaatacaatcaattttgaagacaaaatt 33733953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 39053598 - 39053566
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  39053598 tttatatcgtctcctcagggactagtgcgatat 39053566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 39059970 - 39059938
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  39059970 tttatatcgtctcctcagggactagtgcgatat 39059938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 43686589 - 43686621
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  43686589 tttatatcgtctcctcagggactagtgcgatat 43686621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 45015743 - 45015775
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  45015743 tttatatcgtctcctcagggactagtgcgatat 45015775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 253 - 489
Target Start/End: Original strand, 43669728 - 43669966
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat--ggtttctttcataaac 350  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||||| || || |||| || ||| |    | ||||  | ||| ||||||||||    
T  43669728 tttatatcgtctccatagggactggtgcgatattctaagccgttcaacaatctatatcattctgag-taatggagtggtaataagttttgtttcataaac 43669826  T
Q  351 tatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcagatt-ag 449  Q
    ||  ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||| ||    
T  43669827 tagaaaactatgaaattataaaagatttgagagttaacagggaaatgattatgctgggattaaacttcatcaacctacatatacgtattctcggattaag 43669926  T
Q  450 tgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    ||||| |||||| | |||||||| ||||||||||||||||    
T  43669927 tgttgcggattctaattatcaattgatattatcacatatt 43669966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 244 - 488
Target Start/End: Original strand, 44611196 - 44611441
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttcttt 343  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||  || ||||||| |||||  |||||||   || |||  ||    
T  44611196 agtaagtattt-atatcgtctccacagggactggtgcgatattctaagccgttcaacaattaatatcgttctgagctagggtttcgaagttgtttttgtt 44611294  T
Q  344 cataaactatcaa--act-ctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattc 440  Q
    ||||||||||  |  ||| | ||||   |||| |    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  44611295 cataaactatatagaactacagaaagg-taaatgggacgagagttaacagggaaatgattatgttgggattaaacttcatcaacctattcatatgtattc 44611393  T
Q  441 tcagattagtgttgtggattccatttatcaatcgatattatcacatat 488  Q
    || |||||||||||   || | | |||||||| |||||||||||||||    
T  44611394 tcggattagtgttgcaaatcctaattatcaattgatattatcacatat 44611441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 489
Target Start/End: Original strand, 33033717 - 33033949
Alignment:
Q  257 tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttctttcataaactatcaa 356  Q
    |||| ||||| ||||||||||||||||||||||  ||||||||||||  || ||||||| |||||  ||| | |   || |||  ||||||| |||| ||    
T  33033717 tatcatctccacagggactggtgcgatattctaggccgttcaacaattcatatcgttctgagctagggttgcaaagttgttttggttcataagctataaa 33033816  T
Q  357 act-ctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcagattagtgttgt 455  Q
    ||| | |||||   || ||| | ||||||||||||||||| |||||||||||||||||| |||||||||||| | |||  ||||||| |||||||||||     
T  33033817 actacggaaatgtgaatagaat-gagagttaacagggaaaagattatgttgggattaaatttcatcaacctattcatacatattctcggattagtgttgc 33033915  T
Q  456 ggattccatttatcaatcgatattatcacatatt 489  Q
     ||| | | |||||||| ||||||||||||||||    
T  33033916 cgatcctaattatcaattgatattatcacatatt 33033949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 380 - 489
Target Start/End: Original strand, 22600050 - 22600161
Alignment:
Q  380 agagttaacagggaaatgattatgttgggattaaacttcatcaacct-acttatatgtattctca-gattagtgttgtggattccatttatcaatcgata 477  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||  ||||| | |||||| ||||||    
T  22600050 agagttaacagggaaatgaatatgctgggattaaacttcatcaacctaacttatatgtattctcatgattagtattgcagattctagttatcactcgata 22600149  T
Q  478 ttatcacatatt 489  Q
    || |||| ||||    
T  22600150 ttttcacgtatt 22600161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 13162756 - 13162819
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||  ||||||||||||||    
T  13162756 atcaaaagtaagtattgtatatcgtctcctcagggactagtgcgatatcataaaccgttcaaca 13162819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 37439766 - 37439703
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||||||  ||||||||||||||    
T  37439766 atcaaaagtaagtgttttatatcgtctcctcaggcactagtgcgatatcataaaccgttcaaca 37439703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 17784723 - 17784659
Alignment:
Q  238 atcaaaagtaagtattt-tatatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||   |||||||||||||    
T  17784723 atcaaaagtaagtatttatatatcgtctcctcagggactagtgcgatatcacaaaccgttcaaca 17784659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 24853244 - 24853198
Alignment:
Q  252 ttttatatcgtctcctcagggactggtgcgatattctaaaccgttca 298  Q
    |||||||||||||||||||||||| |||||||||  |||||||||||    
T  24853244 ttttatatcgtctcctcagggactagtgcgatatcataaaccgttca 24853198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 45700931 - 45700878
Alignment:
Q  233 acacgatcaaaagtaagtattt-tatatcgtctcctcagggactggtgcgatat 285  Q
    |||||||||||| ||||||||| |||||||||| |||||||||| |||||||||    
T  45700931 acacgatcaaaaataagtatttatatatcgtcttctcagggactagtgcgatat 45700878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 11910236 - 11910188
Alignment:
Q  238 atcaaaagtaagtattt-tatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  11910236 atcaaaagtaagtttttatatatcgtctcctcagggactagtgcgatat 11910188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 22536033 - 22535957
Alignment:
Q  46 tcaaaagctacaaat-ctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaaca 121  Q
    ||||||||| ||||| |||| ||||| ||||||||||| ||||| |||||| ||||||||| || || |||||||||    
T  22536033 tcaaaagcttcaaattctaaattcaagtagaatcaattctaaaggcaaaatcaattctacttgacagtaaccaaaca 22535957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 31453397 - 31453331
Alignment:
Q  66 ttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaatta 132  Q
    ||||| ||||||||||| || || |||||| |||||||||| | | |||||||||||| ||||||||    
T  31453397 ttcaagtagaatcaattatagaggcaaaataaattctactcaacatcaaccaaacatgacagaatta 31453331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 33502956 - 33503010
Alignment:
Q  102 tactcgaaagcaaccaaacatgtcagaattagttttacaacttcataatcaattt 156  Q
    ||||||| ||||||||||||||||| ||| | ||||||| ||||| |||||||||    
T  33502956 tactcgagagcaaccaaacatgtcaaaatcaattttacaccttcagaatcaattt 33503010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 6327089 - 6327202
Alignment:
Q  16 taaatttatatgtaaaaattaacttttgagtcaaaagctacaaa-tctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaa 114  Q
    ||||||||||||| | |||||| ||| || |||||| ||||||| | || |||||| ||||||||||| || | ||| ||| |||| || || | | |||    
T  6327089 taaatttatatgttagaattaattttagaatcaaaaactacaaattttagtttcaagtagaatcaattctagaaacataatcaattttaatcaacaacaa 6327188  T
Q  115 ccaaacatgtcaga 128  Q
    ||||||||||||||    
T  6327189 ccaaacatgtcaga 6327202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 12950750 - 12950790
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  12950750 agtaagtattt-atatcgtctcctcagggactagtgcgatat 12950790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 13902225 - 13902185
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  13902225 agtaagtattt-atatcgtctcctcagggactagtgcgatat 13902185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 41455560 - 41455600
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  41455560 agtaagtattt-atatcgtctcctcagggactagtgcgatat 41455600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 43501126 - 43501093
Alignment:
Q  97 aattctactcgaaagcaaccaaacatgtcagaat 130  Q
    ||||||||| ||||||||||||||||||||||||    
T  43501126 aattctacttgaaagcaaccaaacatgtcagaat 43501093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 2157574 - 2157606
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  2157574 tttatatcgtctcctcagggactagtgcgatat 2157606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 7630406 - 7630370
Alignment:
Q  90 caaaattaattctactcgaaagcaaccaaacatgtca 126  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  7630406 caaaatcaattctacttgaaagcaaccaaacatgtca 7630370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 12037096 - 12036996
Alignment:
Q  46 tcaaaagctacaaatctaa-tttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaattagttttacaactt 144  Q
    ||||||||||||||| | | |||||| ||||||||||| || | ||| ||  |||||||| ||| | ||||||||||||| ||||| |||| |||| |||    
T  12037096 tcaaaagctacaaattttagtttcaactagaatcaattctagacacataaccaattctacacgacaacaaccaaacatgttagaatcagttctacacctt 12036997  T
Q  145 c 145  Q
    |    
T  12036996 c 12036996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 15852511 - 15852543
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  15852511 tttatatcgtctcctcagggactagtgcgatat 15852543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 17789376 - 17789312
Alignment:
Q  238 atcaaaagtaagtattt-tatatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    ||||||||||||||||| |||||||||| || ||||||| ||| |||||   |||||||||||||    
T  17789376 atcaaaagtaagtatttatatatcgtcttctaagggactagtgtgatatcacaaaccgttcaaca 17789312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 29484888 - 29484920
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  29484888 tttatatcgtctcctcagggactagtgcgatat 29484920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 34835072 - 34835040
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  34835072 tttatatcgtctcctcagggactagtgcgatat 34835040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 34841516 - 34841484
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  34841516 tttatatcgtctcctcagggactagtgcgatat 34841484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 36782445 - 36782413
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  36782445 tttatatcgtctcctcagggactagtgcgatat 36782413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 42931632 - 42931600
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  42931632 tttatatcgtctcctcagggactagtgcgatat 42931600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 43267820 - 43267852
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  43267820 tttatatcgtctcctcagggactagtgcgatat 43267852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 45011944 - 45011976
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  45011944 tttatatcgtctcctcagggactagtgcgatat 45011976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 4501057 - 4501310
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatg 335  Q
    ||||||||||||||||||   |||||||||| || ||||| |||||||||||||| |||||||||||||  | ||||||| |||||| | ||||||| |     
T  4501057 atcaaaagtaagtatttttgttatcgtctccacatggactagtgcgatattctaagccgttcaacaatcagtatcgttctgagctaaggattcgatattt 4501156  T
Q  336 gtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatg 435  Q
     ||| |||||| |||||| |||||    | || ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |    
T  4501157 ttttgtttcatgaactataaaactacagacttgtaagagatatgagagttaacaaggaaatgattatgttgggattaaacttcatcaacctacatatacg 4501256  T
Q  436 tattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    ||||||  ||||||||||| |||||| | |||||||| ||||||||||||||||    
T  4501257 tattctaggattagtgttgcggattctaattatcaattgatattatcacatatt 4501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 4506383 - 4506636
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatg 335  Q
    ||||||||||||||||||   |||| ||||| |||| | |||||||||||||||| |||||||||||||| | ||||||||||||| || ||||| | ||    
T  4506383 atcaaaagtaagtatttttgttatcatctccacaggaattggtgcgatattctaagccgttcaacaatcggtatcgttctaagctacagattcgacattg 4506482  T
Q  336 gtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatg 435  Q
     ||| |||||| ||| || |||||    | || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |    
T  4506483 ttttgtttcatgaaccataaaactacagacttgtaagagatatgagagttaacagggaaatgattatgttgggattaaacttcatcaacctagatatacg 4506582  T
Q  436 tattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    ||||||  ||||||||||| |||||| | |||||||| |||||||||| |||||    
T  4506583 tattctaggattagtgttgcggattctaattatcaattgatattatcaaatatt 4506636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 341 - 489
Target Start/End: Original strand, 27900575 - 27900722
Alignment:
Q  341 tttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattc 440  Q
    ||||||||||||  ||||| ||||||| ||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||| |||| ||||||    
T  27900575 tttcataaactaggaaactatgaaattgtaaaagatttgagagttaaaagg-aaatgattatgctaggattaaacttcatcaacctacgtatacgtattc 27900673  T
Q  441 tcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    || ||||||||||||| |||| | |||||||| ||||||||||||||||    
T  27900674 tcggattagtgttgtgtattctaattatcaattgatattatcacatatt 27900722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 244 - 489
Target Start/End: Original strand, 18866732 - 18866976
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttcttt 343  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||  ||||||||||||  || ||||||| |||||  |||  ||   || |||  ||    
T  18866732 agtaagtatttaa-atcgtctccacagggactggtgcgatattctaggccgttcaacaattcatatcgttctgagctagggttgtgaagttgttttggtt 18866830  T
Q  344 cataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctca 443  Q
    |||||||||| |||||  | || | | || |   | |||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||     
T  18866831 cataaactataaaactacggaaatgtgaatgggataagagttaacagggaaatgattatgttgggattaaacttcatcaacctattcatacgtattctcg 18866930  T
Q  444 gattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    ||||||| |||  ||| | | |||||||| ||||||||||||||||    
T  18866931 gattagtattgcagatcctaattatcaattgatattatcacatatt 18866976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 382 - 488
Target Start/End: Original strand, 4675018 - 4675124
Alignment:
Q  382 agttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcagattagtgttgtggattccatttatcaatcgatattat 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||  |||   | |||||||| ||||||||    
T  4675018 agttaacagggaaatgattatgttgggattaaacttcatcaacctattcatacgtattctcggattagtgttgcagatcttaattatcaattgatattat 4675117  T
Q  482 cacatat 488  Q
    |||||||    
T  4675118 cacatat 4675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 443
Target Start/End: Original strand, 545918 - 546021
Alignment:
Q  341 tttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacct-acttatatgtatt 439  Q
    ||||||||||||  ||||| ||||||| ||||   | ||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||    
T  545918 tttcataaactagaaaactatgaaattgtaaacagtatgagagttaacagggaaatgaatatgctgggattaaacttcatcaacctaacttatatgtatt 546017  T
Q  440 ctca 443  Q
    ||||    
T  546018 ctca 546021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 20628635 - 20628544
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagttt 327  Q
    ||||||||||||||||||   |||||||||| |||| |||| |||| |||||||| || ||||||||||||| ||||||||||||| |||||    
T  20628635 atcaaaagtaagtatttttgttatcgtctccacaggtactgatgcggtattctaagccattcaacaatcgatatcgttctaagctatagttt 20628544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 4674893 - 4674939
Alignment:
Q  257 tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaat 303  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  4674893 tatcgtctccacagggactggtgcgatattctaagccgttcaacaat 4674939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 1441431 - 1441512
Alignment:
Q  46 tcaaaagctacaaatc-taatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtca 126  Q
    |||||||||||||||| || |||||| |||| || ||| || ||||||||| |||||||||| |||| ||||||||||||||    
T  1441431 tcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagaaaccaaacatgtca 1441512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 24899324 - 24899373
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatattc 287  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  24899324 atcaaaagtaagtattgtatatcgtctccacagggactagtgcgatattc 24899373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 24905790 - 24905839
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatattc 287  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  24905790 atcaaaagtaagtattgtatatcgtctccacagggactagtgcgatattc 24905839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 50321837 - 50321895
Alignment:
Q  74 gaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaatta 132  Q
    ||||||||| |  |||||||||||||||||||  ||| |||||||||||||||||||||    
T  50321837 gaatcaattcttgagacaaaattaattctactaaaaaacaaccaaacatgtcagaatta 50321895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 27900466 - 27900545
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttct 315  Q
    |||||||||||||||||    |||||| ||| || |||||||||||||||||||| |||||||| |||| || |||||||    
T  27900466 atcaaaagtaagtatttatgttatcgtttccacatggactggtgcgatattctaagccgttcaataatctatatcgttct 27900545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 46943184 - 46943125
Alignment:
Q  66 ttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtca 126  Q
    ||||| |||||||| || |||| |||||||||||| ||||||||| |||||||||||||||    
T  46943184 ttcaagtagaatca-ttctaaaaacaaaattaattatactcgaaatcaaccaaacatgtca 46943125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 9331387 - 9331332
Alignment:
Q  272 gactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagttt 327  Q
    ||||| ||||||||||||| || ||||||||||||| |||||||||| || |||||    
T  9331387 gactgatgcgatattctaagccattcaacaatcgatatcgttctaagttatagttt 9331332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 34331642 - 34331564
Alignment:
Q  79 aattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaattagttttacaacttcataatcaatttt 157  Q
    |||| |||||| ||||| |||| ||||  ||||||| |||| |||| ||||||| |||| || ||||||||||||||||    
T  34331642 aattctaaagataaaatcaattttacttaaaagcaatcaaatatgttagaattaatttttcatcttcataatcaatttt 34331564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 2785657 - 2785702
Alignment:
Q  241 aaaagtaagtattt-tatatcgtctcctcagggactggtgcgatat 285  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||    
T  2785657 aaaagtaagtatttatgtatcgtctcctcagggactagtgcgatat 2785702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 3577206 - 3577166
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  3577206 agtaagtattt-atatcgtctcctcagggactagtgcgatat 3577166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 4590756 - 4590789
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatatt 286  Q
    ||||||||||||||||||||||| ||||||||||    
T  4590756 tttatatcgtctcctcagggactagtgcgatatt 4590789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 9570810 - 9570777
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatatt 286  Q
    ||||||||||||||||||||||| ||||||||||    
T  9570810 tttatatcgtctcctcagggactagtgcgatatt 9570777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 9577312 - 9577279
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatatt 286  Q
    ||||||||||||||||||||||| ||||||||||    
T  9577312 tttatatcgtctcctcagggactagtgcgatatt 9577279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 4401421 - 4401493
Alignment:
Q  11 aattataaatttatatgtaaaaattaacttttgagtcaaaagctacaaa-tctaatttcaaatagaatcaatt 82  Q
    |||||||||||  | ||||||||| ||||||  | |||||||||||||| || ||||| ||||||||||||||    
T  4401421 aattataaattggtgtgtaaaaatcaactttaaaatcaaaagctacaaattcaaattttaaatagaatcaatt 4401493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 6036228 - 6036260
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  6036228 tttatatcgtctcctcagggactagtgcgatat 6036260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 13014948 - 13014980
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  13014948 tttatatcgtctcctcagggactagtgcgatat 13014980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 18341552 - 18341520
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  18341552 tttatatcgtctcctcagggactagtgcgatat 18341520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 25893192 - 25893224
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  25893192 tttatatcgtctcctcagggactagtgcgatat 25893224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 27502228 - 27502196
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  27502228 tttatatcgtctcctcagggactagtgcgatat 27502196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 32746332 - 32746364
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  32746332 tttatatcgtctcctcagggactagtgcgatat 32746364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 41596231 - 41596270
Alignment:
Q  90 caaaattaattctactcgaaagcaaccaaacatgtcagaat 130  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  41596231 caaaattaattctt-tcgaaagcaaccaaacatgtcagaat 41596270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 48410907 - 48410947
Alignment:
Q  90 caaaattaattctactcgaaagcaaccaaacatgtcagaat 130  Q
    |||||| |||||||||||||||||| ||||||| |||||||    
T  48410907 caaaatcaattctactcgaaagcaatcaaacatctcagaat 48410947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 18765627 - 18765881
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat- 334  Q
    |||||||||||||||||    ||||||||||  ||||||| |||||||||||||| ||||||||||||| || | ||||| || ||| |    | ||||     
T  18765627 atcaaaagtaagtatttctgttatcgtctccatagggactagtgcgatattctaagccgttcaacaatctatattgttctgag-taatggagtggtaata 18765725  T
Q  335 -ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
     | ||| ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  18765726 agttttgtttcataaactagaaaactatgaaattataaaagatttgagagttaacagggaaattattatgctgggattaaacttcatcaacctacgtata 18765825  T
Q  434 tgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
     |||||||  ||||||||||| |||||| | |||||||| ||||||||||||||||    
T  18765826 cgtattcttggattagtgttgcggattctaattatcaattgatattatcacatatt 18765881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 1051159 - 1051413
Alignment:
Q  238 atcaaaagtaagtattttat---atcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat 334  Q
    |||||||||||||||||| |   |||||||||  |||||||||||||||||||||| |||||||||||||  | ||||| | |||||| | ||| ||| |    
T  1051159 atcaaaagtaagtattttttgttatcgtctccatagggactggtgcgatattctaagccgttcaacaatcagtatcgttttgagctaaggattcaatatt 1051258  T
Q  335 ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatat 434  Q
    | ||| |||||| |||||| |||||  ||| || ||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||     
T  1051259 gttttgtttcatgaactataaaactacgaacttgtaagagatatgagagttaacagggaaatgattatgttgggattcaacttcatcaacctacatatac 1051358  T
Q  435 gtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
     ||||||  ||||||| |||  ||||| | |||||||| ||||||||||||||||    
T  1051359 atattctaggattagttttgcagattctaattatcaattgatattatcacatatt 1051413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 244 - 488
Target Start/End: Complemental strand, 10800843 - 10800600
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttcttt 343  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||  || ||||||| |||||  |||||||   || |||  ||    
T  10800843 agtaagtattt-atatcgtctccacagggactggtgcgatattctaagccgttcaacaattcatatcgttctgagctagggtttcgaagttgtttttgtt 10800745  T
Q  344 cataaactatcaaact-ctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctc 442  Q
    ||||||||||  |||| | ||||   |||| |    ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  10800744 cataaactatagaactacagaaagg-taaatgggacgagagttaacagggaaatggttatgttgggattaaacttcatcaacctattcatatgtattctc 10800646  T
Q  443 agattagtgttgtggattccatttatcaatcgatattatcacatat 488  Q
     |||||||||||  ||| | | |||||||| |||||||||||||||    
T  10800645 ggattagtgttgcagatcctaattatcaattgatattatcacatat 10800600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 244 - 488
Target Start/End: Original strand, 7825941 - 7826186
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttcttt 343  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||  || ||||||| |||||  |||||||   || |||  ||    
T  7825941 agtaagtattt-atatcgtctccacagggactggtgcgatattctaagccgttcaacaattcatatcgttctgagctagggtttcgaagttgtttttgtt 7826039  T
Q  344 cataaactatcaa--act-ctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattc 440  Q
    ||||||||||  |  ||| | ||||   |||| |    ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  7826040 cataaactatatagaactacagaaagg-taaatgggacgagagttaacagggaaatgattatgttaggattaaacttcatcaacctattcatatgtattc 7826138  T
Q  441 tcagattagtgttgtggattccatttatcaatcgatattatcacatat 488  Q
    || |||||||||||  ||| | | |||||||| |||||||||||||||    
T  7826139 tcggattagtgttgcagatcctaattatcaattgatattatcacatat 7826186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 489
Target Start/End: Complemental strand, 14118818 - 14118586
Alignment:
Q  257 tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttctttcataaactatcaa 356  Q
    ||||||||||  |||||||||||||||||||||  ||||||||||||  || ||||||| |||||  ||| |||   || |||  |||||||||||| ||    
T  14118818 tatcgtctccatagggactggtgcgatattctaggccgttcaacaattcatatcgttctgagctagggttgcgaagttgttttggttcataaactataaa 14118719  T
Q  357 act-ctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcagattagtgttgt 455  Q
    ||| | |||||   || ||| | ||||||||||||||||| |||||||||||||||||| |||||||||||| | |||  ||||||| |||||||||||     
T  14118718 actacggaaatgtgaatagaat-gagagttaacagggaaaagattatgttgggattaaatttcatcaacctattcatacatattctcggattagtgttgc 14118620  T
Q  456 ggattccatttatcaatcgatattatcacatatt 489  Q
     ||| | | |||||||| ||||||||||||||||    
T  14118619 agatcctaattatcaattgatattatcacatatt 14118586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 489
Target Start/End: Complemental strand, 14122776 - 14122544
Alignment:
Q  257 tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttctttcataaactatcaa 356  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||  || ||||| | |||||  ||| |||   || |||  |||||||||||| ||    
T  14122776 tatcgtctccacagggactggtgcgatattctaggccgttcaacaattcatatcgttttgagctagggttgcgaagttgttttggttcataaactataaa 14122677  T
Q  357 act-ctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcagattagtgttgt 455  Q
    ||| | |||||   || ||| | ||||||||||||||||| |||||||||||||||||| |||||||||||| | |||  ||||||| |||||||||||     
T  14122676 actacggaaatgtgaatagaat-gagagttaacagggaaaagattatgttgggattaaatttcatcaacctattcatacatattctcggattagtgttgc 14122578  T
Q  456 ggattccatttatcaatcgatattatcacatatt 489  Q
     ||| | | |||||||| ||||||||||||||||    
T  14122577 agatcctaattatcaattgatattatcacatatt 14122544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 379 - 454
Target Start/End: Original strand, 24908510 - 24908585
Alignment:
Q  379 gagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcagattagtgttg 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  24908510 gagagttaacagggaaatgattatgttgggattaaacttcatcaacctattcatatgtattctcggattagtgttg 24908585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 1167774 - 1167723
Alignment:
Q  234 cacgatcaaaagtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1167774 cacgatcaaaagtaagtattttatatcgtctcctcagggactagtgcgatat 1167723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 11015199 - 11015263
Alignment:
Q  238 atcaaaagtaagtatttt-atatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||||    
T  11015199 atcaaaagtaagtatttttatatcgtctcctcagggactagtgcgatatcataaaccgttcaaca 11015263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 24908374 - 24908459
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcga 330  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||||||  || ||||||| |||||  |||||||    
T  24908374 agtaagtattt-atatcgtctccatagggactggtgcgatattctaagccgttcaacaattcatatcgttctgagctagggtttcga 24908459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 1485217 - 1485277
Alignment:
Q  66 ttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtca 126  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| | ||||| |||||||||||    
T  1485217 ttcaagtagaatcaattctaaaggcaaaattaattctactcaagagcaaacaaacatgtca 1485277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 7280556 - 7280424
Alignment:
Q  15 ataaatttatatgtaaaaattaacttttgagtcaaaagctacaaatctaa-tttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagca 113  Q
    |||||||| | |||||||| ||| |||  | ||||||||||||| | | | ||| || || |||||||| ||  |||| ||| ||||||||| |||||||    
T  7280556 ataaatttgtgtgtaaaaagtaattttgaaatcaaaagctacaagttttagttttaagtaaaatcaattttagggacacaatcaattctacttgaaagca 7280457  T
Q  114 accaaacatgtcagaattagttttacaacttca 146  Q
    ||||||||||| ||||||| ||||||| |||||    
T  7280456 accaaacatgtgagaattaattttacaccttca 7280424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 13105143 - 13105227
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagcta 321  Q
    ||||||||||||||||||   |||||||||| || ||||||||| ||||||| || | ||||||||||| || |||||||||||||    
T  13105143 atcaaaagtaagtatttttgttatcgtctccacatggactggtgtgatattc-aagctgttcaacaatcaatatcgttctaagcta 13105227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 9517840 - 9517919
Alignment:
Q  238 atcaaaagtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaag 318  Q
    |||||||||||||||| |||||||||||| || ||||| | ||||||||| || || |||||||||| || | ||||||||    
T  9517840 atcaaaagtaagtattgtatatcgtctccacaaggactagcgcgatattc-aagccattcaacaatcaatattgttctaag 9517919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 2008430 - 2008472
Alignment:
Q  87 agacaaaattaattctactcgaaagcaaccaaacatgtcagaa 129  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  2008430 agacaaaatgaattctactcgaaaacaatcaaacatgtcagaa 2008472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 30926856 - 30926910
Alignment:
Q  72 tagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtca 126  Q
    ||||||| ||| ||||| ||||| ||||||||||||| ||| |||||||||||||    
T  30926856 tagaatccattctaaagccaaaactaattctactcgagagcgaccaaacatgtca 30926910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 1428691 - 1428651
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  1428691 agtaagtattt-atatcgtctcctcagggactagtgcgatat 1428651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 4186647 - 4186680
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatatt 286  Q
    ||||||||||||||||||||||| ||||||||||    
T  4186647 tttatatcgtctcctcagggactagtgcgatatt 4186680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 11058418 - 11058378
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  11058418 agtaagtattt-atatcgtctcctcagggactagtgcgatat 11058378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 30117536 - 30117496
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  30117536 agtaagtattt-atatcgtctcctcagggactagtgcgatat 30117496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 34711825 - 34711785
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  34711825 agtaagtattt-atatcgtctcctcagggactagtgcgatat 34711785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 4020496 - 4020464
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  4020496 tttatatcgtctcctcagggactagtgcgatat 4020464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 4026922 - 4026890
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  4026922 tttatatcgtctcctcagggactagtgcgatat 4026890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 4910975 - 4910799
Alignment:
Q  14 tataaatttatatgtaaaaattaacttttgagtcaaaagctacaaatc-taatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagc 112  Q
    ||||||||| ||||| ||||| || | | || |||||||||||||||| ||  ||||| ||||||||||| |  || || ||| ||||||| | ||   |    
T  4910975 tataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcagaatcaattctaattgacgac 4910876  T
Q  113 aaccaaacatgtcagaattagttttacaacttcataatcaattttagccactttaaaagtagagcaagacatacact 189  Q
    |||||||||||||||||| | || ||||  |||| |||||||| ||| | || ||||||| || | | |||||||||    
T  4910875 aaccaaacatgtcagaatcaattctacacattcagaatcaattatagtctctctaaaagtggaaccaaacatacact 4910799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 5724701 - 5724765
Alignment:
Q  66 ttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaat 130  Q
    ||||| ||||||||||| |  || |||||| ||||||||  ||||||| ||||||||||||||||    
T  5724701 ttcaagtagaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtcagaat 5724765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 7062744 - 7062712
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  7062744 tttatatcgtctcctcagggactagtgcgatat 7062712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 7069960 - 7069928
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  7069960 tttatatcgtctcctcagggactagtgcgatat 7069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 7952759 - 7952875
Alignment:
Q  46 tcaaaagctacaaatc-taatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaattagttttacaactt 144  Q
    |||||||||||||||| |   ||||| |||||| |||| |  || ||||||||| || |||| ||| ||| ||||||||||| ||| | ||||||| ||     
T  7952759 tcaaaagctacaaatcctcgcttcaagtagaataaattttggaggcaaaattaaatcaactcaaaaccaatcaaacatgtcataatcaattttacacctc 7952858  T
Q  145 cataatcaattttagcc 161  Q
    |||||| ||||||||||    
T  7952859 cataattaattttagcc 7952875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 32328753 - 32328721
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  32328753 tttatatcgtctcctcagggactagtgcgatat 32328721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 34648761 - 34648793
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  34648761 tttatatcgtctcctcagggactagtgcgatat 34648793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 34655212 - 34655244
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  34655212 tttatatcgtctcctcagggactagtgcgatat 34655244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 238 - 489
Target Start/End: Complemental strand, 9335431 - 9335177
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat- 334  Q
    |||||||||||||||||    |||||||||| ||||||||||||||||| ||||| ||||||||||||| || | ||||| || ||| |    | ||||     
T  9335431 atcaaaagtaagtatttatgttatcgtctccacagggactggtgcgataatctaagccgttcaacaatctatattgttctgag-taatggagtggtaata 9335333  T
Q  335 -ggtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
     | ||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||    
T  9335332 agttttgtttcataaactagaaaactatgaaattataaaagatttgagagttaacagggaaatgattatgctgggattaaacttcatcaacctattcata 9335233  T
Q  434 tgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
     |||||||| |||||||||||   || | | |||||||| ||||||||||||||||    
T  9335232 cgtattctcggattagtgttgcatatcctaattatcaattgatattatcacatatt 9335177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 238 - 482
Target Start/End: Complemental strand, 4694496 - 4694250
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatg 335  Q
    ||||||||||||||||||   |||||||| | || ||||||||||||| ||||||  ||||||||| ||| | ||||| | |||||| | ||||||| ||    
T  4694496 atcaaaagtaagtatttttgttatcgtcttcacaaggactggtgcgattttctaagtcgttcaacattcggtatcgttatgagctaaggattcgatattg 4694397  T
Q  336 gtttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatg 435  Q
     ||| |||||| |||||| |||||  | | || ||| |||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||| || ||    
T  4694396 ttttgtttcatgaactataaaactacggacttgtaagagatatgagagttaacaggaaaattattatgttggcattaaacttcatcaacctactcatgtg 4694297  T
Q  436 tattctcagattagtgttgtggattccatttatcaatcgatattatc 482  Q
    ||||||| ||||||||||| ||||||||   || |||||||||||||    
T  4694296 tattctcggattagtgttgcggattccaaccattaatcgatattatc 4694250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 244 - 488
Target Start/End: Complemental strand, 40821602 - 40821357
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatggtttcttt 343  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||  || ||||||| |||||  |||||||   || |||  ||    
T  40821602 agtaagtattt-atatcgtctccacagggactggtgcgatattctaagccgttcaacaattcatatcgttctgagctagggtttcgaagttgtttttgtt 40821504  T
Q  344 cataaactatcaa--act-ctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattc 440  Q
    ||||||||||  |  ||| | ||||   |||| |    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  40821503 cataaactatatagaactacagaaagg-taaatgggacgagagttaacagggaaatgattatgttgggattaaacttcatcaacctattcatatgtattc 40821405  T
Q  441 tcagattagtgttgtggattccatttatcaatcgatattatcacatat 488  Q
    || |||||||||||  ||| | | |||||||| |||||||||||||||    
T  40821404 tcggattagtgttgcagatcctaattatcaattgatattatcacatat 40821357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 12919235 - 12919144
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagttt 327  Q
    ||||||||||||||||||   |||||||||| || ||||||||| |||||||||| || ||||||||||||| ||||||||||||| |||||    
T  12919235 atcaaaagtaagtattttcgttatcgtctccacatggactggtgtgatattctaagccattcaacaatcgatatcgttctaagctatagttt 12919144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 3413575 - 3413484
Alignment:
Q  238 atcaaaagtaagtattttat--atcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagttt 327  Q
    ||||||||||||||||||    ||||||||| || |||||||||||||||||||| || |||| |||||||| || |||||||||| |||||    
T  3413575 atcaaaagtaagtatttttgtcatcgtctccacatggactggtgcgatattctaagccattcagcaatcgatatcattctaagctatagttt 3413484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 27374357 - 27374425
Alignment:
Q  61 ctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaa 129  Q
    |||| ||||| ||||||||||| | ||| |||||||||||||||| |||| ||||||||||||||||||    
T  27374357 ctaacttcaagtagaatcaattcttaaggcaaaattaattctacttgaaaacaaccaaacatgtcagaa 27374425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 6951320 - 6951439
Alignment:
Q  11 aattataaatttatatgtaaaaattaacttttgagtcaaaagctacaaat-ctaatttcaaatagaatcaattgtaaagacaaaattaattctactcgaa 109  Q
    |||||||||||||| |||| |||| || | | || ||||||||||||||| |||| ||||| ||||||||||| || ||||  || | ||||||||||||    
T  6951320 aattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaattatagagac-gaactgattctactcgaa 6951418  T
Q  110 agcaaccaaacatgtcagaat 130  Q
    || ||| ||| ||||||||||    
T  6951419 agtaactaaatatgtcagaat 6951439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 42729069 - 42729160
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagttt 327  Q
    ||||||||||||||||||   |||||||||| ||||||||||||| |||||||||  | |||||||||| || | |||||||| || |||||    
T  42729069 atcaaaagtaagtatttttgttatcgtctccacagggactggtgcaatattctaagtcattcaacaatcaatattgttctaagttatagttt 42729160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 10898730 - 10898670
Alignment:
Q  72 tagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaatta 132  Q
    ||||||||||| || || |||||| |||| ||||||| ||||||||||||||||| |||||    
T  10898730 tagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaatta 10898670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 19853756 - 19853696
Alignment:
Q  241 aaaagtaagtattttatatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    ||||||||||||| ||||| ||||||| ||| ||| |||||||||  ||||||||||||||    
T  19853756 aaaagtaagtattgtatattgtctccttaggaactagtgcgatatcataaaccgttcaaca 19853696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 34738143 - 34738207
Alignment:
Q  238 atcaaaagtaagtattt-tatatcgtctcctcagggactggtgcgatattctaaaccgttcaaca 301  Q
    |||| |||||||||||| ||||||||||||||||||||| |||||||    ||||||||||||||    
T  34738143 atcagaagtaagtatttatatatcgtctcctcagggactagtgcgattccataaaccgttcaaca 34738207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 9843303 - 9843344
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatatt 286  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  9843303 agtaagtattt-atatcgtctcctcagggactagtgcgatatt 9843344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 2438755 - 2438795
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  2438755 agtaagtattt-atatcgtctcctcagggactagtgcgatat 2438795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 12506053 - 12506001
Alignment:
Q  235 acgatcaaaagtaagtattttat--atcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||| |||  |||||||||||||| ||| |||||||||    
T  12506053 acgatcaaaagtaagtattgtatgtatcgtctcctcaggaactagtgcgatat 12506001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 33794046 - 33794086
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  33794046 agtaagtattt-atatcgtctcctcagggactagtgcgatat 33794086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 34357556 - 34357516
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  34357556 agtaagtattt-atatcgtctcctcagggactagtgcgatat 34357516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 34359347 - 34359307
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  34359347 agtaagtattt-atatcgtctcctcagggactagtgcgatat 34359307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 2957820 - 2957852
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  2957820 tttatatcgtctcctcagggactagtgcgatat 2957852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 2966289 - 2966321
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  2966289 tttatatcgtctcctcagggactagtgcgatat 2966321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 11648096 - 11648036
Alignment:
Q  66 ttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtca 126  Q
    ||||| ||||||||||| ||||  || ||| |||||||||||| ||||| |||||||||||    
T  11648096 ttcaagtagaatcaattttaaatgcataataaattctactcgacagcaatcaaacatgtca 11648036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 18851132 - 18851244
Alignment:
Q  46 tcaaaagctacaaatc-taatttcaaatagaatcaattgtaaagacaaaattaattctactcgaaagcaaccaaacatgtcagaattagttttacaactt 144  Q
    |||||||||||||||| ||  ||||| ||||||||||| ||  || |  || ||||||| | || |||||||||||| |||||| | | || |||||||     
T  18851132 tcaaaagctacaaatcatagcttcaagtagaatcaattatagggataggatcaattctaattgatagcaaccaaacacgtcagagtcaattctacaactc 18851231  T
Q  145 cataatcaatttt 157  Q
    |||||||||||||    
T  18851232 cataatcaatttt 18851244  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 25894910 - 25894878
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  25894910 tttatatcgtctcctcagggactagtgcgatat 25894878  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 28031244 - 28031288
Alignment:
Q  66 ttcaaatagaatcaattgtaaagacaaaattaattctactcgaaa 110  Q
    ||||||||||||||||| | || ||| ||||||||||||||||||    
T  28031244 ttcaaatagaatcaattatgaatacataattaattctactcgaaa 28031288  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 29980421 - 29980453
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  29980421 tttatatcgtctcctcagggactagtgcgatat 29980453  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 30041504 - 30041472
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  30041504 tttatatcgtctcctcagggactagtgcgatat 30041472  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 42150780 - 42150812
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  42150780 tttatatcgtctcctcagggactagtgcgatat 42150812  T

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Target: scaffold0012 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 202340 - 202594
Alignment:
Q  238 atcaaaagtaagtatttta--tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataatg 335  Q
    |||||||||||||||||    |||||||||| ||||||||||||||| ||||||| | |||||||||||||| ||||| | || ||| |    | || |     
T  202340 atcaaaagtaagtatttatgttatcgtctccacagggactggtgcgacattctaagcggttcaacaatcgatatcgttatgag-taatggagtggtagta 202438  T
Q  336 g--tttctttcataaactatcaaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttata 433  Q
       ||| ||||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  202439 aattttgtttcataaactataaaactataaaattacaaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacatata 202538  T
Q  434 tgtattctcagattagtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
     |||||||| |||||| |||| |||||| | || ||||| | ||||||||||||||    
T  202539 cgtattctcggattagcgttgcggattctaattctcaattggtattatcacatatt 202594  T

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Target: scaffold0291 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 257 - 489
Target Start/End: Complemental strand, 1975 - 1736
Alignment:
Q  257 tatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagctaaagtttcgataat--ggtttctttcataaactatc 354  Q
    |||||||||| || |||||||||||||||||||| ||||||||||||| || ||||||| || ||| |    | ||||  | ||| ||||||||||||      
T  1975 tatcgtctccacaaggactggtgcgatattctaagccgttcaacaatctatatcgttctgag-taatggagtggtaataagttttgtttcataaactaga 1877  T
Q  355 aaactctgaaattataaaagatttgagagttaacagggaaatgattatgttgggattaaacttcatcaacc------tacttatatgtattctcagatta 448  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||      ||| |||| |||| ||| |||||    
T  1876 aaactatgaaattataaaagatttgagagttaacagggaaatggttatgctaggattaaacttcatcaacctacgtatacgtatacgtatactcggatta 1777  T
Q  449 gtgttgtggattccatttatcaatcgatattatcacatatt 489  Q
    |||||| |||||| | |||||||| ||||||||||||||||    
T  1776 gtgttgcggattctaattatcaattgatattatcacatatt 1736  T

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Target: scaffold0045 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 2880 - 2768
Alignment:
Q  378 tgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcaga-ttagtgttgtggattccatttatcaatcgat 476  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||| || ||||||||| |||| | | |||||||| |||    
T  2880 tgagagttaacagggaaatgattatgttgggattaaaattcatcaacctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgat 2781  T
Q  477 attatcacatatt 489  Q
    |||||||||||||    
T  2780 attatcacatatt 2768  T

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Target: scaffold0045; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 9262 - 9150
Alignment:
Q  378 tgagagttaacagggaaatgattatgttgggattaaacttcatcaacctacttatatgtattctcaga-ttagtgttgtggattccatttatcaatcgat 476  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||| || ||||||||| |||| | | |||||||| |||    
T  9262 tgagagttaacagggaaatgattatgttgggattaaaattcatcaacctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgat 9163  T
Q  477 attatcacatatt 489  Q
    |||||||||||||    
T  9162 attatcacatatt 9150  T

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Target: scaffold0045; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 9387 - 9320
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagct 320  Q
    ||||||||||||||||||||||| |||||||||||||  || |||||||||  || ||||||| ||||    
T  9387 tttatatcgtctcctcagggactagtgcgatattctaggccattcaacaattcatatcgttctgagct 9320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 3005 - 2938
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatattctaaaccgttcaacaatcgatgtcgttctaagct 320  Q
    |||||||||||||||||||||||  ||||||||||||  || |||||||||  || ||||||| ||||    
T  3005 tttatatcgtctcctcagggactaatgcgatattctaggccattcaacaattcatatcgttctgagct 2938  T

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Target: scaffold0744 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 6939 - 6979
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  6939 agtaagtattt-atatcgtctcctcagggactagtgcgatat 6979  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 15125 - 15165
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  15125 agtaagtattt-atatcgtctcctcagggactagtgcgatat 15165  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 5273 - 5233
Alignment:
Q  244 agtaagtattttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  5273 agtaagtattt-atatcgtctcctcagggactagtgcgatat 5233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 24506 - 24474
Alignment:
Q  253 tttatatcgtctcctcagggactggtgcgatat 285  Q
    ||||||||||||||||||||||| |||||||||    
T  24506 tttatatcgtctcctcagggactagtgcgatat 24474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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