View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707-Insertion-1 (Length: 824)
Name: NF1707-Insertion-1
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 477
Target Start/End: Complemental strand, 14948070 - 14947603
Alignment:
| Q |
7 |
agtattatattcccttggttgttatgttgctaaga-----tgagccctattactcattcattccaaagat-tttaggatattatcatgcttgaagacatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
14948070 |
agtattatattcccttggttgttatgttgccaagacccattgagccctattactcattcattccaaagatctttaggatattatcatgcttcaagacatt |
14947971 |
T |
|
| Q |
101 |
ttccagccctatatttcgaagaacattgttgtctttcaacaaaagattttgcctgaattttccatatggtcaatttggaaagctcgaaatgagattgcaa |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14947970 |
ttccagccctatatttcgaagaacatcgttgtctttcaacagaagattttgcctgaattttccatatggtcaatttggaaagctcgaaatgagattgcaa |
14947871 |
T |
|
| Q |
201 |
atgtttggtgttttgttggaaatccacgtccttattgtattagcatcatgcaatatagccccggtgtgcaactagtttgattttgtttatgagcaaacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14947870 |
atgtttggtgttttgttggaaatccacgtccttattgtattagcatcatgcaatataaccccggtgtgcaactagtttaattttgtttatgagcaaacta |
14947771 |
T |
|
| Q |
301 |
attttatggaagaagatcaaactagcacaaaatacacaaaactgctcctaaatcagaataccattgataggatacacaatgacttgtcaaaatactaaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14947770 |
attttatggaagaagatcaaactagcacaaaatatacaaaactgctcctaaatcagaataccattgataggatacacaatgacttgtcaaaatactaaca |
14947671 |
T |
|
| Q |
401 |
taattaatgaaacacaagacaagtagagataagtttcaatcatgtggtgtggcatcacataacgatccccctaccct |
477 |
Q |
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| T |
14947670 |
----taatgaaacacaagacaagtagaaataagtttcaatca-----tgtggcatcacataacgatccccctaccct |
14947603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 511 - 700
Target Start/End: Complemental strand, 14947186 - 14946998
Alignment:
| Q |
511 |
ccatgtgataaaatcacatattcacatcaccaacaagaagacatcaccgtcctaccaattttaagtactttgaaaacatacatgtggatttaaccaagaa |
610 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
14947186 |
ccatgtgataaaagcacatattcacatcaccaacaagaaaacatcaccatcctaccaattttaagtactttcaaaacatacacgtggatttaaccaagaa |
14947087 |
T |
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| Q |
611 |
caatactaaaatttgataattaatattacacttgatatcacatatttatttttgaaacatttgatatgatatatcaaaaacatacaattt |
700 |
Q |
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| T |
14947086 |
caatactaaaatttgataattaatattacacttgatatcacatatttatttttgaaacatttgatatgatgtatc-aaaacatacaattt |
14946998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 744 - 808
Target Start/End: Complemental strand, 19850017 - 19849951
Alignment:
| Q |
744 |
cgatccaa-aatcaattaatctgag-ggaccaatctcactgcctacttgtgggggccctgtttaaag |
808 |
Q |
| |
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|||||||| |||| |||||| |||| ||||||||||||| ||| ||||| ||||||||||||||||| |
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|
| T |
19850017 |
cgatccaagaatcgattaatttgagaggaccaatctcaccgcccacttgcgggggccctgtttaaag |
19849951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 766 - 808
Target Start/End: Complemental strand, 48105037 - 48104995
Alignment:
| Q |
766 |
agggaccaatctcactgcctacttgtgggggccctgtttaaag |
808 |
Q |
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| T |
48105037 |
agggaccaatctcaccgcccacttgtgggggccctgtttaaag |
48104995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 733 - 808
Target Start/End: Complemental strand, 8077841 - 8077765
Alignment:
| Q |
733 |
aactcggcctccgatccaa-aatcaattaatctgagggaccaatctcactgcctacttgtgggggccctgtttaaag |
808 |
Q |
| |
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||||||| ||||||||||| |||| ||||||| |||||||||| ||| ||| ||||| ||||||||||||||||| |
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| T |
8077841 |
aactcggtctccgatccaataatcgattaatcgaggggaccaatcccaccgcccacttgcgggggccctgtttaaag |
8077765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 808
Target Start/End: Original strand, 8779774 - 8779815
Alignment:
| Q |
767 |
gggaccaatctcactgcctacttgtgggggccctgtttaaag |
808 |
Q |
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| T |
8779774 |
gggaccaatcccaccgcctacttgtgggggccccgtttaaag |
8779815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 808
Target Start/End: Original strand, 6953037 - 6953086
Alignment:
| Q |
759 |
taatctgagggaccaatctcactgcctacttgtgggggccctgtttaaag |
808 |
Q |
| |
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||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| |
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| T |
6953037 |
taatccgagggaccaatcccaccgccaacttgcgggggccctgtttaaag |
6953086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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