View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707-Insertion-11 (Length: 567)

Name: NF1707-Insertion-11
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707-Insertion-11
NF1707-Insertion-11
[»] chr8 (8 HSPs)
chr8 (7-175)||(32472991-32473155)
chr8 (347-475)||(32473303-32473431)
chr8 (167-325)||(32473119-32473278)
chr8 (168-273)||(6253559-6253666)
chr8 (106-151)||(6253396-6253441)
chr8 (107-148)||(44119344-44119385)
chr8 (93-129)||(20086210-20086246)
chr8 (96-151)||(44374085-44374141)
[»] chr1 (7 HSPs)
chr1 (7-175)||(21761346-21761513)
chr1 (58-128)||(21761936-21762006)
chr1 (167-271)||(21761277-21761382)
chr1 (109-175)||(37770263-37770329)
chr1 (167-270)||(37770195-37770299)
chr1 (107-148)||(27109019-27109060)
chr1 (82-119)||(37770721-37770758)
[»] chr5 (7 HSPs)
chr5 (7-175)||(36759040-36759207)
chr5 (185-269)||(36759189-36759274)
chr5 (90-175)||(36758472-36758559)
chr5 (108-156)||(37280499-37280547)
chr5 (107-148)||(5123786-5123827)
chr5 (107-175)||(7362672-7362741)
chr5 (154-218)||(36758457-36758521)
[»] scaffold0146 (5 HSPs)
scaffold0146 (9-175)||(29825-29995)
scaffold0146 (9-175)||(32167-32337)
scaffold0146 (43-151)||(24526-24634)
scaffold0146 (167-268)||(32301-32402)
scaffold0146 (167-268)||(29959-30060)
[»] chr4 (5 HSPs)
chr4 (43-148)||(43035864-43035969)
chr4 (60-147)||(43036393-43036482)
chr4 (167-271)||(43036446-43036551)
chr4 (217-271)||(2333850-2333904)
chr4 (107-147)||(53068938-53068978)
[»] chr2 (10 HSPs)
chr2 (88-177)||(42683533-42683622)
chr2 (167-235)||(4425914-4425983)
chr2 (161-271)||(42683466-42683577)
chr2 (110-175)||(4424860-4424925)
chr2 (193-271)||(31435030-31435109)
chr2 (136-173)||(4425949-4425986)
chr2 (167-247)||(41474697-41474776)
chr2 (189-271)||(34456935-34457018)
chr2 (190-271)||(40614739-40614822)
chr2 (110-147)||(18815711-18815748)
[»] scaffold0039 (1 HSPs)
scaffold0039 (108-155)||(106851-106898)
[»] chr7 (4 HSPs)
chr7 (164-274)||(18792602-18792713)
chr7 (217-272)||(38653080-38653135)
chr7 (184-273)||(47317776-47317866)
chr7 (90-130)||(35611983-35612023)
[»] chr3 (3 HSPs)
chr3 (167-273)||(44006393-44006500)
chr3 (104-149)||(16869252-16869297)
chr3 (225-273)||(37459726-37459774)
[»] scaffold1903 (1 HSPs)
scaffold1903 (90-127)||(1086-1123)
[»] scaffold0184 (1 HSPs)
scaffold0184 (220-261)||(28678-28719)
[»] scaffold0078 (1 HSPs)
scaffold0078 (220-261)||(44125-44166)
[»] scaffold0325 (1 HSPs)
scaffold0325 (189-272)||(2812-2896)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 32472991 - 32473155
Alignment:
Q  7 acttcaagcatcatggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagattt 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  32472991 acttcaagcatca-ggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaag---tgttgtgtagtgtgaattgaagaaaagattt 32473086  T
Q  107 cagcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 175  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||    
T  32473087 cagcggtagttaactaccactggggccagcggtagttaactgttgtcgggtcctcagcggtagttaact 32473155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 347 - 475
Target Start/End: Original strand, 32473303 - 32473431
Alignment:
Q  347 gaggatgtagtagtatattaaagtcgatatataatgcatttgattgaccaagacatatatgattataattccttataaagtgttccagagtgcaaaagtt 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32473303 gaggatgtagtagtatattaaagtcgatatataatgcatttgattgaccaagacatatctgattataattccttataaagtgttccagagtgcaaaagtt 32473402  T
Q  447 ttttcacttttcaggacatagtatatggg 475  Q
    |||||||||||||||||||||||||||||    
T  32473403 ttttcacttttcaggacatagtatatggg 32473431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 32473119 - 32473278
Alignment:
Q  167 tagttaactgttgtcgggtcctcaacgatagttaactactactggggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 265  Q
    |||||||||||||||||||||||| || |||||||||||||||  || |||| |||||||||||||||||||||||||| |||||||||| |||||  ||    
T  32473119 tagttaactgttgtcgggtcctcagcggtagttaactactacttagggcatttaagtattttacttgtgtcgatgtgaagttttttatgtcaaaaaaaca 32473218  T
Q  266 attttcaatatttaattagaatagatatgcaacgctaggatgtagtagcatatttcttat 325  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32473219 attttcaatatttaatgagaatagatatgcaacgctaggatgtagtagcatatttcttat 32473278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 6253559 - 6253666
Alignment:
Q  168 agttaactgttgtcgggtcctcaa-cgatagttaactactactggggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 265  Q
    |||||||||||||||| | ||| | || |||||||||||  | ||||||||| ||||||||||||||||||  |||||| |||| ||||| | ||| |||    
T  6253559 agttaactgttgtcggtttctctagcggtagttaactaccgcgggggacatttaagtattttacttgtgtcattgtgaagttttctatgttagaaaagca 6253658  T
Q  266 attttcaa 273  Q
    ||||||||    
T  6253659 attttcaa 6253666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 6253441 - 6253396
Alignment:
Q  106 tcagcggtagttaactaccgctggggccaacggtagttaactgttg 151  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  6253441 tcagcggtagttaactaccgttgggtccagcggcagttaactgttg 6253396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 44119344 - 44119385
Alignment:
Q  107 cagcggtagttaactaccgctggggccaacggtagttaactg 148  Q
    ||||| |||||||||||||||||| ||||||| |||||||||    
T  44119344 cagcgatagttaactaccgctgggaccaacggcagttaactg 44119385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 20086210 - 20086246
Alignment:
Q  93 tgaagaaaagatttcagcggtagttaactaccgctgg 129  Q
    |||||||| || |||||||||||||||||||||||||    
T  20086210 tgaagaaaggaattcagcggtagttaactaccgctgg 20086246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 44374141 - 44374085
Alignment:
Q  96 agaaaagatttcagcggtagttaactaccgctgggg-ccaacggtagttaactgttg 151  Q
    ||||| || |||||||||||||| |||| ||||||| |||||||||||||| |||||    
T  44374141 agaaatgaattcagcggtagttagctactgctggggcccaacggtagttaattgttg 44374085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 21761513 - 21761346
Alignment:
Q  7 acttcaagcatcatggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagattt 106  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21761513 acttcaagcatca-ggtaagaattttatttgggtagtgaagaaaagcaacgaagatggagaagaagaagtgttgtgtagtgtgaattgaagaaaagattt 21761415  T
Q  107 cagcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 175  Q
    ||||||||| |||| ||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  21761414 cagcggtagataaccaccactggggccagcggtagttaactgatgtcgggtcctcaacggtagttaact 21761346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 21761936 - 21762006
Alignment:
Q  58 aagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttcagcggtagttaactaccgctg 128  Q
    ||||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||    
T  21761936 aagatggagaagaagaaatgctttgtagtgtgaattgaagaaaagatttcagcggcagttaactaccgctg 21762006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 271
Target Start/End: Complemental strand, 21761382 - 21761277
Alignment:
Q  167 tagttaactgttgtcgggtcctcaacgatagttaactactactggggacattaag-tattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 265  Q
    |||||||||| |||||||||||||||| |||||||||||  || ||| |||| || |||||||||| |||| ||||||| |||||||||| ||||| |||    
T  21761382 tagttaactgatgtcgggtcctcaacggtagttaactaccgctaggggcatttagatattttacttttgtcaatgtgaagttttttatgtcaaaaaagca 21761283  T
Q  266 attttc 271  Q
    ||||||    
T  21761282 attttc 21761277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 37770329 - 37770263
Alignment:
Q  109 gcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 175  Q
    ||||||||||||||||| || || || ||||||||||||| | |||| |||||||||||||||||||    
T  37770329 gcggtagttaactaccgttgaggtcagcggtagttaactgatatcggatcctcaacgatagttaact 37770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 37770299 - 37770195
Alignment:
Q  167 tagttaactgttgtcgggtcctcaacgatagttaactactactggggaca-ttaagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 265  Q
    |||||||||| | |||| |||||||||||||||||||||   ||||| || ||||||||||||| ||||||  || ||| |||||||||| ||||| | |    
T  37770299 tagttaactgatatcggatcctcaacgatagttaactaccgttgggggcatttaagtattttacgtgtgtcattgcgaagttttttatgtcaaaaaagta 37770200  T
Q  266 atttt 270  Q
    |||||    
T  37770199 atttt 37770195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 27109019 - 27109060
Alignment:
Q  107 cagcggtagttaactaccgctggggccaacggtagttaactg 148  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  27109019 cagcggtagttaactaccgctgggaccagcggcagttaactg 27109060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 37770721 - 37770758
Alignment:
Q  82 gtagtgtgaattgaagaaaagatttcagcggtagttaa 119  Q
    |||||||||||||||||||||||||||| || ||||||    
T  37770721 gtagtgtgaattgaagaaaagatttcagtggcagttaa 37770758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 6e-57; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 36759040 - 36759207
Alignment:
Q  7 acttcaagcatcatggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagattt 106  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36759040 acttcaagcatca-ggtaagaattttatttgggtagtgaagaaaagcaacgaagatggagaagaagaagtgttgtgtagtgtgaattgaagaaaagattt 36759138  T
Q  107 cagcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 175  Q
     |||||| ||||||||| |||||||||| ||||||||||| | |  ||| ||||||||| |||||||||    
T  36759139 tagcggtggttaactactgctggggccagcggtagttaacggctaccggatcctcaacggtagttaact 36759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 36759189 - 36759274
Alignment:
Q  185 tcctcaacgatagttaactactactggggacattaag-tattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattt 269  Q
    ||||||||| |||||||||||  |||||| |||| || ||||||||||||||| ||||||| |||||||||| ||||| |||||||    
T  36759189 tcctcaacggtagttaactaccgctgggggcattcaggtattttacttgtgtcaatgtgaagttttttatgtcaaaaaagcaattt 36759274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 36758559 - 36758472
Alignment:
Q  90 aattgaagaaaagatttcagcggtagttaactaccgctggggc--caacggtagttaactgttgtcgggtcctcaacgatagttaact 175  Q
    ||||||||||| || |||||||||||||||||||||||||| |  |||||||||||||||   | ||||||||||||  |||||||||    
T  36758559 aattgaagaaatgaattcagcggtagttaactaccgctgggtcctcaacggtagttaactaccgccgggtcctcaacagtagttaact 36758472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 37280547 - 37280499
Alignment:
Q  108 agcggtagttaactaccgctggggccaacggtagttaactgttgtcggg 156  Q
    |||||||||||||||||| | |||||| |||||||||||| ||||||||    
T  37280547 agcggtagttaactaccgtttgggccagcggtagttaactattgtcggg 37280499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 5123827 - 5123786
Alignment:
Q  107 cagcggtagttaactaccgctggggccaacggtagttaactg 148  Q
    ||||||||||||||||||| | || |||||||||||||||||    
T  5123827 cagcggtagttaactaccgtttggaccaacggtagttaactg 5123786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 7362672 - 7362741
Alignment:
Q  107 cagcggtagttaactaccgctggggccaacggtagttaactgttgtcgg-gtcctcaacgatagttaact 175  Q
    |||||| ||||||||||||||| ||||| ||| | ||||||| ||||||  ||||||||| |||||||||    
T  7362672 cagcggcagttaactaccgctgaggccagcggcacttaactgatgtcggcttcctcaacggtagttaact 7362741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 36758521 - 36758457
Alignment:
Q  154 gggtcctcaacgatagttaactgttgtcgggtcctcaacgatagttaactactactggggacatt 218  Q
    |||||||||||| |||||||||   | ||||||||||||  |||||||||||  |||||||||||    
T  36758521 gggtcctcaacggtagttaactaccgccgggtcctcaacagtagttaactaccgctggggacatt 36758457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 29825 - 29995
Alignment:
Q  9 ttcaagcatcatggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagt-----gtgaattgaagaaaaga 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||     ||||||| |||||||||    
T  29825 ttcaagcatcatg-taagaattttatttgggtagtgaagaaaagcaacgaagatggagaagaagaagtgttgtgtagtgtgaagtgaattcaagaaaaga 29923  T
Q  104 tttcagcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 175  Q
     ||||||||||||||||||||| | || | | ||||||||||||  || ||||||||||||| |||||||||    
T  29924 attcagcggtagttaactaccgttaggactagcggtagttaactactgccgggtcctcaacggtagttaact 29995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 32167 - 32337
Alignment:
Q  9 ttcaagcatcatggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagt-----gtgaattgaagaaaaga 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||     ||||||| |||||||||    
T  32167 ttcaagcatcatg-taagaattttatttgggtagtgaagaaaagcaacgaagatggagaagaagaagtgttgtgtagtgtgaagtgaattcaagaaaaga 32265  T
Q  104 tttcagcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 175  Q
     ||||||||||||||||||||| | || | | ||||||||||||  || ||||||||||||| |||||||||    
T  32266 attcagcggtagttaactaccgttaggactagcggtagttaactactgccgggtcctcaacggtagttaact 32337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 24634 - 24526
Alignment:
Q  43 tgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttcagcggtagttaactaccgctggggccaacggtagt 142  Q
    |||||||||| | | ||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| ||| |||    
T  24634 tgaagaaaagtaacaaagatggagaagaagaagtgctgtgtagtgtgaattgaagaaaagatttcagcggcagttaactaccgctggcaccagcggcagt 24535  T
Q  143 taactgttg 151  Q
    |||||||||    
T  24534 taactgttg 24526  T

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Target: scaffold0146; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 32301 - 32402
Alignment:
Q  167 tagttaactgttgtcgggtcctcaacgatagttaactactactggggaca-ttaagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 265  Q
    |||||||||  || ||||||||||||| |||||||||||  |||||| || ||||||||||||||||||||  |||| || ||||||||| ||||| |||    
T  32301 tagttaactactgccgggtcctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtg-aagtttttatgtcaaaaaagca 32399  T
Q  266 att 268  Q
    |||    
T  32400 att 32402  T

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Target: scaffold0146; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 29959 - 30060
Alignment:
Q  167 tagttaactgttgtcgggtcctcaacgatagttaactactactggggaca-ttaagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 265  Q
    |||||||||  || ||||||||||||| |||||||||||  || ||| || ||||||||||||||||| ||  |||| || ||||||||| ||||| |||    
T  29959 tagttaactactgccgggtcctcaacggtagttaactaccgctaggggcatttaagtattttacttgtatcattgtg-aagtttttatgtcaaaaaagca 30057  T
Q  266 att 268  Q
    |||    
T  30058 att 30060  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 43035969 - 43035864
Alignment:
Q  43 tgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttcagcggtagttaactaccgctggggccaacggtagt 142  Q
    |||||||||||| | |||||| |||||||||| || ||||||||||||||||||||||||||||||| || |||||||||||||| |  ||| ||| |||    
T  43035969 tgaagaaaagcaacaaagatgtagaagaagaagtgctgtgtagtgtgaattgaagaaaagatttcagtggcagttaactaccgctagcaccagcggcagt 43035870  T
Q  143 taactg 148  Q
    ||||||    
T  43035869 taactg 43035864  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 43036393 - 43036482
Alignment:
Q  60 gatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttcagcggtagttaactaccgctggggc--caacggtagttaact 147  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | || ||| |  |||||||||||||||    
T  43036393 gatggagaagaagaagtgctgtgtagtgtgaattgaagaaaagatttcagcggtagttaactgctgccgggtcctcaacggtagttaact 43036482  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 43036446 - 43036551
Alignment:
Q  167 tagttaactgttgtcgggtcctcaacgatagttaactactactggggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 265  Q
    |||||||||| || ||||||||||||| |||||||||||  || ||| |||| ||||||||||||||||||  |||||| |||||||||| ||||| |||    
T  43036446 tagttaactgctgccgggtcctcaacggtagttaactaccgctaggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcaaaaaagca 43036545  T
Q  266 attttc 271  Q
    ||||||    
T  43036546 attttc 43036551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 2333850 - 2333904
Alignment:
Q  217 ttaagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttc 271  Q
    ||||||||||||||||||||  |||||| |||||||||| | ||| |||||||||    
T  2333850 ttaagtattttacttgtgtcattgtgaagttttttatgtcagaaaagcaattttc 2333904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 53068938 - 53068978
Alignment:
Q  107 cagcggtagttaactaccgctggggccaacggtagttaact 147  Q
    ||||||||||||||||||| || ||||||||| ||||||||    
T  53068938 cagcggtagttaactaccgttgaggccaacggcagttaact 53068978  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 42683622 - 42683533
Alignment:
Q  88 tgaattgaagaaaagatttcagcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaactgt 177  Q
    ||||||||||| | || ||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||   ||||||||||    
T  42683622 tgaattgaagagatgaattcagcggtagttaactaccgctgaaaccaacggtagttaactgctgtcgggtcctcaacaggagttaactgt 42683533  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 4425983 - 4425914
Alignment:
Q  167 tagttaactgttgtcgggtcctcaacgatagttaactactactggggaca-ttaagtattttacttgtgt 235  Q
    ||||||||||||||||||||||||||| ||||||| ||||  ||||| || |||||||||||||||||||    
T  4425983 tagttaactgttgtcgggtcctcaacggtagttaagtactgttgggggcatttaagtattttacttgtgt 4425914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 271
Target Start/End: Complemental strand, 42683577 - 42683466
Alignment:
Q  161 caacgatagttaactgttgtcgggtcctcaacgatagttaactactactggggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaa 259  Q
    ||||| |||||||||| |||||||||||||||   ||||||||   | ||||| |||| |||||||||| |||||||  |||||| |||||||||| |||    
T  42683577 caacggtagttaactgctgtcgggtcctcaacaggagttaactgtcattgggggcatttaagtattttatttgtgtcattgtgaagttttttatgtcaaa 42683478  T
Q  260 aaggcaattttc 271  Q
    || |||||||||    
T  42683477 aaagcaattttc 42683466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 4424860 - 4424925
Alignment:
Q  110 cggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 175  Q
    ||||||||||||| || |||| ||| ||||||||||||| || ||||||||||||| |||||||||    
T  4424860 cggtagttaactatcgttgggaccagcggtagttaactgatgccgggtcctcaacggtagttaact 4424925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 31435030 - 31435109
Alignment:
Q  193 gatagttaactactactggggacattaa-gtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttc 271  Q
    |||||||||||||| |||||| ||| || ||||||||||||||||  | ||||||||| ||||| ||||| |||||||||    
T  31435030 gatagttaactactgctgggggcataaacgtattttacttgtgtctttatgaaattttctatgtcaaaaaagcaattttc 31435109  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 4425986 - 4425949
Alignment:
Q  136 cggtagttaactgttgtcgggtcctcaacgatagttaa 173  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4425986 cggtagttaactgttgtcgggtcctcaacggtagttaa 4425949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 41474697 - 41474776
Alignment:
Q  167 tagttaactgttgtcgggtcctcaacgatagttaactactactggggacattaagtattttacttgtgtcgatgtgaaatt 247  Q
    ||||||||||||| |||||| |||||| |||||||||||| |||  |   ||||||||||||||||||||  |||||||||    
T  41474697 tagttaactgttg-cgggtcatcaacggtagttaactactgctgaagtatttaagtattttacttgtgtcattgtgaaatt 41474776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 34457018 - 34456935
Alignment:
Q  189 caacgatagttaactactactggggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttc 271  Q
    |||||||||||||||||  ||| || |||| ||||||||||||||||||  | | || |||||||||| ||||| |||||||||    
T  34457018 caacgatagttaactaccgctgagggcatttaagtattttacttgtgtctttataaagttttttatgtcaaaaaagcaattttc 34456935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 40614739 - 40614822
Alignment:
Q  190 aacgatagttaactactactggggacatt-aagtattttacttgtgtcgatgtgaa-attttttatgtgaaaaaggcaattttc 271  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||  | ||||  |||||||||| ||||| |||||||||    
T  40614739 aacggtagttaactactgctgggggcatttaagtattttacttgtgtctttatgaagtttttttatgtcaaaaaagcaattttc 40614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 18815711 - 18815748
Alignment:
Q  110 cggtagttaactaccgctggggccaacggtagttaact 147  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  18815711 cggtggttaactaccgctggggccagcggtagttaact 18815748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 106898 - 106851
Alignment:
Q  108 agcggtagttaactaccgctggggccaacggtagttaactgttgtcgg 155  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  106898 agcggtagttaactaccgctggtgccagcggcagttaactgttgtcgg 106851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 18792602 - 18792713
Alignment:
Q  164 cgatagttaactgttgtcgggtcctcaacgatagttaactactactggggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaag 262  Q
    |||||||||||| | |  || |||| |||| ||||||| |||| |||| |||||| ||||||||||||||||||  | |||| |||||||||| |||||     
T  18792602 cgatagttaactatagatggttcctgaacggtagttaattactgctggagacatttaagtattttacttgtgtctttatgaagttttttatgtcaaaaaa 18792701  T
Q  263 gcaattttcaat 274  Q
    |||||| |||||    
T  18792702 gcaattgtcaat 18792713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 38653080 - 38653135
Alignment:
Q  217 ttaagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttca 272  Q
    |||||||||||| |||||||  | |||||||||||||||||||||  |||||||||    
T  38653080 ttaagtattttatttgtgtctttatgaaattttttatgtgaaaaaatcaattttca 38653135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 47317776 - 47317866
Alignment:
Q  184 gtcctcaacgatagttaactactactggggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttcaa 273  Q
    |||||||||| |||||||||||  |||||| |||| ||||||||||||||||||  ||| || ||||  |||| | ||| |||||||||||    
T  47317776 gtcctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtaaagttttcaatgtcagaaaagcaattttcaa 47317866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 35611983 - 35612023
Alignment:
Q  90 aattgaagaaaagatttcagcggtagttaactaccgctggg 130  Q
    |||| ||||||||  ||||||||||||||||||||||||||    
T  35611983 aattaaagaaaagtattcagcggtagttaactaccgctggg 35612023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 44006500 - 44006393
Alignment:
Q  167 tagttaactgttgtcgggtcctcaacgatagttaactactactggggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 265  Q
    |||||||||| || ||| |||| |||| |||||||||||  |||||| |||| ||||||||||||| ||||  |||||||||||  |||| | ||| |||    
T  44006500 tagttaactgctgccggttcctgaacggtagttaactaccgctgggggcatttaagtattttacttatgtcattgtgaaattttcaatgtcagaaaagca 44006401  T
Q  266 attttcaa 273  Q
    ||||||||    
T  44006400 attttcaa 44006393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 16869252 - 16869297
Alignment:
Q  104 tttcagcggtagttaactaccgctggggccaacggtagttaactgt 149  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||||    
T  16869252 tttcagcggtagttaactaccgctgagtccaacagtagttaactgt 16869297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 37459774 - 37459726
Alignment:
Q  225 tttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttcaa 273  Q
    |||||||||||| ||||||| |||| ||||| ||||| |||||||||||    
T  37459774 tttacttgtgtcaatgtgaagttttctatgtcaaaaaagcaattttcaa 37459726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 1086 - 1123
Alignment:
Q  90 aattgaagaaaagatttcagcggtagttaactaccgct 127  Q
    |||||||||||||  |||||||||||||||||||||||    
T  1086 aattgaagaaaagtattcagcggtagttaactaccgct 1123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 28678 - 28719
Alignment:
Q  220 agtattttacttgtgtcgatgtgaaattttttatgtgaaaaa 261  Q
    ||||||||||||||||| || ||||||||||||||| |||||    
T  28678 agtattttacttgtgtcaatatgaaattttttatgtaaaaaa 28719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 44166 - 44125
Alignment:
Q  220 agtattttacttgtgtcgatgtgaaattttttatgtgaaaaa 261  Q
    ||||||||||||||||| || ||||||||||||||| |||||    
T  44166 agtattttacttgtgtcaatatgaaattttttatgtaaaaaa 44125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 2896 - 2812
Alignment:
Q  189 caacgatagttaactactactggggacattaa-gtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttca 272  Q
    ||||| |||||||||||  ||| || |||||| ||||||||||| |||| || |||| |||| ||||| ||||| ||||||||||    
T  2896 caacggtagttaactaccgctgtgggcattaacgtattttacttatgtctatatgaagttttctatgtcaaaaaagcaattttca 2812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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