View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707-Insertion-12 (Length: 535)

Name: NF1707-Insertion-12
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707-Insertion-12
NF1707-Insertion-12
[»] chr7 (2 HSPs)
chr7 (6-535)||(48827816-48828345)
chr7 (249-285)||(9869320-9869356)


Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 6 - 535
Target Start/End: Complemental strand, 48828345 - 48827816
Alignment:
Q  6 caacttcaaagatcaaatcaaagagcatgaagataacattgagttccttaattctcaatccaatcgcctaactgaatcggttgtcgacctacaaagtatg 105  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48828345 caacttcaaaggtcaaatcaaaaagcatgaagataacattgagttccttaattctcaatccaatcgcctaactgaatcggttgtcgacctacaaagtatg 48828246  T
Q  106 tttagaaattcatccatgtgtgcacttgttttgtttccaggaataattcatcattttgatttatgagagtgtgatcatggtcgtcaaaattggattttta 205  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48828245 tttagaaattcatccatgtatgcacttgttttgtttccgggaataattcatcattttgatttatgagagtgtgatcatggtcgtcaaaatcggattttta 48828146  T
Q  206 atcatataatcctcaattttactattaatgttgccttgagtgtgattatacgtaaaatcccgattttgactaccttgagtgtgactataatttaagatga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48828145 atcatataatcctcaattttactattaatgttgccttgagtgtgattatacgtaaaatcccgattttgactaccttgagtgtgactataatttaagatga 48828046  T
Q  306 attagatatcttatgtgataaaccctaatttagtgcatttttatgaattgctttgggagataaaaaatttacgtagactttgatatagtaccattcaann 405  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  48828045 attagatatcttatgtggtaaaccctaatttagtgcatttttatgaattgctttgggagataaaaaatttacgaagactttgatatagtaccattcaatt 48827946  T
Q  406 nnnnnnagtgagccttggaaagtaccattcaactaatgtgactaaatcagagaatgggaatggtgcatttcatactgaagaggaaacagtggaacagata 505  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48827945 ttttttagtgagccttggaaagtaccattcaactaatgtgactaaatcagagaatgggaatggtgcatttcatactgaagaggaaacagtggaacagata 48827846  T
Q  506 ttgaagaaagagaactctgctgctagcata 535  Q
    ||||||||||||||||||||||||||||||    
T  48827845 ttgaagaaagagaactctgctgctagcata 48827816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 9869356 - 9869320
Alignment:
Q  249 gattatacgtaaaatcccgattttgactaccttgagt 285  Q
    |||||||||||||||  ||||||||||||||||||||    
T  9869356 gattatacgtaaaatttcgattttgactaccttgagt 9869320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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