View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707-Insertion-13 (Length: 403)
Name: NF1707-Insertion-13
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707-Insertion-13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 45469414 - 45469018
Alignment:
| Q |
8 |
atatcaacaacacaatggaatcagaggacaatgaaactttcttcaacagccaagtcttcctgctttcaaaattcattttacaacggaaagacataagtca |
107 |
Q |
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| T |
45469414 |
atatcaacaacacaatggaatcagaggacaatgaaactttcttcaacagccaagtcttcctgctttcaaaattcattttacaacggaaagacataagtca |
45469315 |
T |
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| Q |
108 |
ttaagcgcttatcaaaaacataatgggnnnnnnnntgagctaatcaatgaagaaagaaaccacaaactaaataacagtattgtgcaattgaacttataaa |
207 |
Q |
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| T |
45469314 |
ttaagcgcttatcaaaaacataatggggaaaaaaatgagctaatcaatgaagaaagaaaccacaaactaaataacaatattgtgcaattgaacttataaa |
45469215 |
T |
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| Q |
208 |
cagaattaattattcacgactaaaag-cggatattacaaccttcaaggatttgagtttcatccttcagacacaccaatccaaattgacaaaactatatag |
306 |
Q |
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| T |
45469214 |
cagaattaattattcacgactaaaaaacggatattacaaccttcaaggatttgagtttcatccttcagacacaccaatccaaattgacaaaactatatag |
45469115 |
T |
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| Q |
307 |
ttcaagaagaccacaaactatattcacagaaaaacatcactacaggacactgaaattcactcttccatttcatcatcgtcaacttcctcaattctca |
403 |
Q |
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| T |
45469114 |
ttcaagaagaccacaaactatattcacagaaaaacatcactacaggacaatgaaattcactcttccatttcatcatcgtcaacttcctcaattctca |
45469018 |
T |
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