View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707-Insertion-15 (Length: 336)
Name: NF1707-Insertion-15
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707-Insertion-15 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 11413046 - 11412827
Alignment:
| Q |
8 |
catattatgtcacagttagtagtttttgtatcagaggagcaaaatcgaaaaatgggtcattttattttatggagttttcaagcattacccacgttattat |
107 |
Q |
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| T |
11413046 |
catattatgtcagagttagtagtttttgtatcagaggaacaaaatcgaaaaatgggtcattttgttttatggagttttcaagcattacccacgtttttat |
11412947 |
T |
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| Q |
108 |
caattcaagcatcatagcctttgtcaactacctctgctccacaaaatcgatgaaagaacgtaccaaaattgtgctagatagaaaggtatttcatactatt |
207 |
Q |
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| T |
11412946 |
caattcaagcatcatagcctttgtcatctacctctgctccacaaaatcgatgaaagaacataccaaaattgtgctagatagaaagatatttcatactatt |
11412847 |
T |
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| Q |
208 |
ttctatttgttatccttttc |
227 |
Q |
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||| ||||||||||||||| |
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| T |
11412846 |
ttcattttgttatccttttc |
11412827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 11412510 - 11412449
Alignment:
| Q |
275 |
gatcgcaagatctgtgtgaaggtataatagcttttcactttttcaattttgttcattgatta |
336 |
Q |
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| T |
11412510 |
gatcgcaagatctgtgtgaaggtataatagcttttcactttttcaattctgttcattgatta |
11412449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 17723120 - 17723173
Alignment:
| Q |
223 |
ttttcgcgaacaaaattagtgtaaccaggcatatcttgccaacattttaaaaga |
276 |
Q |
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| T |
17723120 |
ttttctcgaacaaaatcactataaccaggcatatcttgccaacatttcaaaaga |
17723173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 29970458 - 29970505
Alignment:
| Q |
222 |
cttttcgcgaacaaaattagtgtaaccaggcatatcttgccaacattt |
269 |
Q |
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| T |
29970458 |
cttttcacgaacaaaatcagtataacctggcatatcttgccaacattt |
29970505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 18680232 - 18680190
Alignment:
| Q |
223 |
ttttcgcgaacaaaattagtgtaaccaggcatatcttgccaac |
265 |
Q |
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| T |
18680232 |
ttttcgagaccaaaattattgtaaccaggcatatcttgccaac |
18680190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 8302294 - 8302334
Alignment:
| Q |
229 |
cgaacaaaattagtgtaaccaggcatatcttgccaacattt |
269 |
Q |
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| T |
8302294 |
cgaacaaaatcattataaccaggcatatcttgccaacattt |
8302334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 35544708 - 35544758
Alignment:
| Q |
275 |
gatcgcaagatctgtgtgaaggt---ataatagcttttcactttttcaatt |
322 |
Q |
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||||||||||||||||| ||||| |||||||||||| |||||||||||| |
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| T |
35544708 |
gatcgcaagatctgtgtaaaggtataataatagcttttaactttttcaatt |
35544758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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