View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1707-Insertion-26 (Length: 769)
Name: NF1707-Insertion-26
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707-Insertion-26 |
 | |
|
| [»] chr5 (24 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 707; Significance: 0; HSPs: 24)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 7 - 769
Target Start/End: Complemental strand, 37429628 - 37428857
Alignment:
| Q |
7 |
acttgggcctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttcta |
106 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429628 |
acttggacctctcatacaccgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttcta |
37429529 |
T |
|
| Q |
107 |
tggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattat-----ttt |
201 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37429528 |
tgctgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattatattatttt |
37429429 |
T |
|
| Q |
202 |
caaacctcacacacctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37429428 |
caaacctcacacacctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaattttagt |
37429329 |
T |
|
| Q |
302 |
attttcctttaataa----cctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatgg |
397 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429328 |
attttcctttaataaataacctaacaggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatgg |
37429229 |
T |
|
| Q |
398 |
cccaattccgattcaaatcaccaaattttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttg |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429228 |
cccaattccgattcaaatcaccaaattttccaagttaaattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttg |
37429129 |
T |
|
| Q |
498 |
ccttcgttgtcatggttgtatctcaatgataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataaca |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429128 |
ccttcgttgtcatggttgtatctcaatgataaccaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataaca |
37429029 |
T |
|
| Q |
598 |
agttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaa |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429028 |
agttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaa |
37428929 |
T |
|
| Q |
698 |
tttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacag |
769 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37428928 |
tttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacag |
37428857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 25 - 766
Target Start/End: Complemental strand, 37640741 - 37640000
Alignment:
| Q |
25 |
ctgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatc |
124 |
Q |
| |
|
|||| ||||| | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| | |||||||||| |
|
|
| T |
37640741 |
ctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcagattgcaatttagatgggatggttcctctatc |
37640642 |
T |
|
| Q |
125 |
tttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctcactacc |
224 |
Q |
| |
|
||||||||||||||| ||||||||| | || ||||| || ||| || ||| ||||||||| |||||||| |||||||||||| |||||||| | |
|
|
| T |
37640641 |
tttgtggaacctcacccaactaacatatttggacctttcatttaataaacttaatggtgagatctcaccattactttcaaacctcaaacacctcattcat |
37640542 |
T |
|
| Q |
225 |
tttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaataacctaatag |
324 |
Q |
| |
|
| || ||||||| ||||||||| | ||||| ||| | ||| | || | | | |||| ||| ||||| | ||| |||||| ||||||| || |
|
|
| T |
37640541 |
tgtgatcttggatttaataactttagcggtagcatcccaattgtttatggaaatttaatcaaattggaatatttatcactttactttaacaacctaacag |
37640442 |
T |
|
| Q |
325 |
gccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaatt |
424 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||| |||||| ||| ||||| | | ||| ||| ||| |||||||||||| ||| ||||| | ||| |
|
|
| T |
37640441 |
gccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcatataacaaactagttggcccaattccaattgaaatcgcaaaacg |
37640342 |
T |
|
| Q |
425 |
ttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaat |
524 |
Q |
| |
|
|||||| || | ||| ||| | ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||| | |||||| |||| | |
|
|
| T |
37640341 |
ttccaaattgagatatgtgggtttggatgataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagt |
37640242 |
T |
|
| Q |
525 |
gataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttacatggtccttttccaaattcaa |
624 |
Q |
| |
|
|| ||| | |||||||||| |||||||||||||| || ||| ||| | | | | | |||| |||||||| |||| |||| |||||||||||||| |
|
|
| T |
37640241 |
gacaacaatctcacagggttcattggtgagttctcaacatattctttgcaatctttgtatctctttaataacaacctacaaggtcattttccaaattcaa |
37640142 |
T |
|
| Q |
625 |
tatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttctaagtttaaattacttacttt |
724 |
Q |
| |
|
||||| || ||||||||||||||||||||| |||||||||||| |||||||| ||||| || || ||| || | ||||| || || || ||| | || |
|
|
| T |
37640141 |
tatttcaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttcaaaattaaacaaactaagttc |
37640042 |
T |
|
| Q |
725 |
cctcgatctttcgcacaatagctttctttctatcaactttga |
766 |
Q |
| |
|
||| |||||||| || ||||| ||||||||||||||| |||| |
|
|
| T |
37640041 |
ccttgatctttcccataatagttttctttctatcaacattga |
37640000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 286 - 682
Target Start/End: Complemental strand, 37594932 - 37594536
Alignment:
| Q |
286 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaa |
385 |
Q |
| |
|
|||| ||| |||||| | |||||||||| ||||||| ||||||||||||||||||| | ||||||||| |||| |||||||| |||| |||||| | ||| |
|
|
| T |
37594932 |
aattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataa |
37594833 |
T |
|
| Q |
386 |
taaattagatggcccaattccgattcaaatcaccaaattttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactgg |
485 |
Q |
| |
|
||| ||| ||| |||||||| ||| ||||||| ||| ||| || || | ||| ||| ||||| ||||| |||||||||||||| ||| |
|
|
| T |
37594832 |
caaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagggataacatgttaaatggaacaattccacattgg |
37594733 |
T |
|
| Q |
486 |
tgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcc |
585 |
Q |
| |
|
|||||||| ||||||||||||| | ||||| |||| | ||| | || ||||||| ||||||||||| || || ||| ||| | ||| | || | |
|
|
| T |
37594732 |
tgttattctttgccttcgttgttagaattgtacctcagcaacaacaatcttacagggttcattggtgagttttcaacatattctttgcaatatttgtttc |
37594633 |
T |
|
| Q |
586 |
tctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt |
682 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||||||||| || |||||||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
37594632 |
tctctaataacagcctacatggtcattttccaaattcaatatttcaactccaaaatctatcttacttaactttgtcatcaaccaacttgagtggtgt |
37594536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 585 - 675
Target Start/End: Original strand, 37413107 - 37413197
Alignment:
| Q |
585 |
ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttga |
675 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
37413107 |
ctctctaataacaagttacatggtcattttccaaattcaatatttaaattccaaaatcttacttacttaggtttgtcatcaacaaacttga |
37413197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 38 - 682
Target Start/End: Complemental strand, 37824751 - 37824107
Alignment:
| Q |
38 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
137 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
37824751 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcatattgcaattttgatgggattgttcctctatctttgtggaacctc |
37824652 |
T |
|
| Q |
138 |
actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctcactacctttggtcttggaa |
237 |
Q |
| |
|
|| ||||||||| | || ||||| || || || ||| |||||||| |||||||| |||||||||||| |||||||| | | || ||||| | |
|
|
| T |
37824651 |
acccaactaacatatttggacctttcacaaaataagcttaacggtgagatctcaccattactttcaaacctcaaacacctcattcattgtgatcttgcag |
37824552 |
T |
|
| Q |
238 |
ataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaataacctaataggccaagttccatc |
337 |
Q |
| |
|
| |||||||| | ||||| ||| | |||| | || | | | |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
37824551 |
agaataactttagcggtagcatcccaaatgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatc |
37824452 |
T |
|
| Q |
338 |
atcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttccaagttacat |
437 |
Q |
| |
|
|||| | ||||||||| |||| |||||| ||| ||||||| | ||| ||| ||| |||||||||||| ||| ||||||| ||| ||| || || | |
|
|
| T |
37824451 |
atcactttttcatctacctcatctttcttatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagt |
37824352 |
T |
|
| Q |
438 |
tttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactca |
537 |
Q |
| |
|
|||| |||| | ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||| | |||| |||| || ||| | |||| |
|
|
| T |
37824351 |
attgtggatttaagctttaacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgggcctcagcgacaaccacctca |
37824252 |
T |
|
| Q |
538 |
cagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatcca |
637 |
Q |
| |
|
|||||| ||||||||||| || || ||| ||| | ||| | ||||| |||||||| ||| |||| ||||||||||||||||||| || |||| |
|
|
| T |
37824251 |
cagggttcattggtgagttttcaacatattctttgcaatatttggatctctctaataacaacctacgaggtcattttccaaattcaatatttcaactcca |
37824152 |
T |
|
| Q |
638 |
aaatcttacttacttagctttgtcatcaaccaacttgagaggtgt |
682 |
Q |
| |
|
||||||||| | ||| |||||||||||| |||||||| ||||| |
|
|
| T |
37824151 |
aaatcttaccgagttaattttgtcatcaacaaacttgagtggtgt |
37824107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 585 - 682
Target Start/End: Original strand, 37400729 - 37400826
Alignment:
| Q |
585 |
ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt |
682 |
Q |
| |
|
||||| |||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
37400729 |
ctctctaataacaacctacaaggtcattttccaaattcaatatttgaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgt |
37400826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 25 - 761
Target Start/End: Complemental strand, 37436576 - 37435840
Alignment:
| Q |
25 |
ctgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatc |
124 |
Q |
| |
|
|||| ||||| | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||| | || ||||| |||| | |||||||||| |
|
|
| T |
37436576 |
ctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagaccttttaggttgcaattttgatgggatggttcctctatc |
37436477 |
T |
|
| Q |
125 |
tttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctcactacc |
224 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||| || | || || ||| |||||||| |||||||| ||||||||| | ||||||||| | |
|
|
| T |
37436476 |
tttgtggaacctcactcaactaacatatttggacctttcaagaaataaacttaacagtgagatttcaccattactttcaaacccctcacacctcatttat |
37436377 |
T |
|
| Q |
225 |
tttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaataacctaatag |
324 |
Q |
| |
|
| || |||||| |||||||||| | ||||| || | |||| | || || | ||| |||| ||| ||||| | |||||| || | ||||| || |
|
|
| T |
37436376 |
tgtgaccttggatataataactttagcggtagcattccaaatgtttatcaaaatttaaccaaattggaatatttatcactttcctccaacagcctaacag |
37436277 |
T |
|
| Q |
325 |
gccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaatt |
424 |
Q |
| |
|
||||||||||||||||| | ||||||||| | || |||||| ||||||||||| ||||| ||| ||| |||||||||||| ||| |||| || ||| |
|
|
| T |
37436276 |
gccaagttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggcccaattccaattgaaattacaaaacg |
37436177 |
T |
|
| Q |
425 |
ttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaat |
524 |
Q |
| |
|
|| || || | ||| | || ||| ||||| ||||| |||||||||||||| |||||||||| |||||||| |||| | |||||| ||| || |
|
|
| T |
37436176 |
tttaaaattgagctatgtgggtctagaatataacatgttaaatggaacaattccacagtggtgttattatttgccttcattgttagagttgtacctccat |
37436077 |
T |
|
| Q |
525 |
gataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttacatggtccttttccaaattcaa |
624 |
Q |
| |
|
| ||| | |||||||||| ||||||||||| || || ||| || | | | | ||||| |||||||| || | |||| |||| ||||||||| |
|
|
| T |
37436076 |
tacaaccatctcacagggttcattggtgagttttcaacatattcttttcaatctttgactctctcaaataacaacctagaaggtcatttttcaaattcaa |
37435977 |
T |
|
| Q |
625 |
tatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttctaagtttaaattacttacttt |
724 |
Q |
| |
|
||||| || |||||||||||||| | |||| |||||||||||| |||||||| ||||| || || ||| || | ||||| || ||||| || | | | |
|
|
| T |
37435976 |
tatttcaactccaaaatcttactgaattagatttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttcaaaacttaaaaatctaattct |
37435877 |
T |
|
| Q |
725 |
cctcgatctttcgcacaatagctttctttctatcaac |
761 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
37435876 |
cctcaatctttcgcacaatagttttctttctatcaac |
37435840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 295 - 682
Target Start/End: Complemental strand, 37712223 - 37711836
Alignment:
| Q |
295 |
atttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattaga |
394 |
Q |
| |
|
|||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||| |||| |||||| ||| ||||| | ||| ||| ||| |
|
|
| T |
37712223 |
atttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcagataacaaactagt |
37712124 |
T |
|
| Q |
395 |
tggcccaattccgattcaaatcaccaaattttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattcc |
494 |
Q |
| |
|
|||||||||||| ||| ||||||| ||| ||| || || | ||| |||| | ||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
37712123 |
tggcccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttggatgataacatgttaaatggaacaattccacagtggtgttattct |
37712024 |
T |
|
| Q |
495 |
ttgccttcgttgtcatggttgtatctcaatgataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaata |
594 |
Q |
| |
|
|||||||| |||| | |||| |||| || ||| | |||||||||| |||||||||||||| || ||| ||| | | | | ||||| |||| |
|
|
| T |
37712023 |
ttgccttcattgttagagttgggcctcagcgacaaccacctcacagggttcattggtgagttctcaacatattctttgcaatctttggatctctctaata |
37711924 |
T |
|
| Q |
595 |
acaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt |
682 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||| || |||||||||||||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
37711923 |
acaacctacaaggtcattttccaaattcaatatttcaactccaaaatcttacttacttatatttgtcatcaacaaacttgagtggtgt |
37711836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 304 - 766
Target Start/End: Complemental strand, 37703258 - 37702796
Alignment:
| Q |
304 |
tttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat |
403 |
Q |
| |
|
|||||| ||| || |||| ||||||||||||||||||| | ||||||||| |||| |||| ||| |||| |||||| ||||| ||| ||| ||| ||||| |
|
|
| T |
37703258 |
tttcctctaacaagctaacaggccaagttccatcatcactttttcatctacctcacctttttattttaggtttatcatttaacaaactagttgggccaat |
37703159 |
T |
|
| Q |
404 |
tccgattcaaatcaccaaattttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcg |
503 |
Q |
| |
|
||| ||| ||||||| ||| ||| || || | ||| ||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
37703158 |
tccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagggataacatgttaaatggaacaattccacattggtgttattctttgccttcg |
37703059 |
T |
|
| Q |
504 |
ttgtcatggttgtatctcaatgataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttac |
603 |
Q |
| |
|
|||| | ||||| ||| || ||| | |||||||||| |||||||||||||| || ||| ||| | | | | ||||| | |||||| ||| |
|
|
| T |
37703058 |
ttgttagggttggtcctcggcgacaaccacctcacagggttcattggtgagttctcaacatattctttgcaatctttggatctctctagtaacaacctac |
37702959 |
T |
|
| Q |
604 |
atggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttc |
703 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||| |||||| |||||| ||||| |||||||| ||||| || || ||| || | ||||| |
|
|
| T |
37702958 |
atggtcattttccaaattcaatatatgaactccaaaatcttaccaacttagatttgtcgtcaacaaacttgagtggtgtcgtggattttcaccaattttc |
37702859 |
T |
|
| Q |
704 |
taagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttga |
766 |
Q |
| |
|
|| || ||| ||| | || |||| |||||| |||||||| ||| ||||||||||| |||| |
|
|
| T |
37702858 |
aaaattaaaaaaactaaattccctcattctttcacacaatagttttatttctatcaacattga |
37702796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 462 - 692
Target Start/End: Original strand, 37382063 - 37382293
Alignment:
| Q |
462 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagggtcaattggtgagttctcta |
561 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||| |||| ||| | ||| |||| ||||| ||| |||| ||||| || |||||||| ||||| | |
|
|
| T |
37382063 |
ttaaatggagcaattccaccctggtgttattccttgacttcattggtagaattggatcttaatgacaaccaactaacaggttcgattggtgaattctcga |
37382162 |
T |
|
| Q |
562 |
ctagttcattgaattatctattcctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtc |
661 |
Q |
| |
|
|| ||| |||| |||||||| ||||| |||||||| || | ||| ||||||||||||||||| | || | ||||||||| | |||||| ||||| |
|
|
| T |
37382163 |
cttattccttgatatatctatttctctctaataacaacataaaaggtgattttccaaattcaatatataaattacaaaatctttttgacttaggattgtc |
37382262 |
T |
|
| Q |
662 |
atcaaccaacttgagaggtgtagtagacttt |
692 |
Q |
| |
|
||||||||||||||| ||||| || |||||| |
|
|
| T |
37382263 |
atcaaccaacttgagtggtgttgtggacttt |
37382293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 507
Target Start/End: Complemental strand, 37697667 - 37697174
Alignment:
| Q |
14 |
cctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgtt |
113 |
Q |
| |
|
|||||| |||||||| ||||| | ||||||||| ||||||||||| | |||||||||||||| | |||| ||||| || ||||| |||| | |
|
|
| T |
37697667 |
cctctcttacactgctttctcaggtgaaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgcaattttgatgggatg |
37697568 |
T |
|
| Q |
114 |
cttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || || || || | ||| || ||| |||||||| |||||||| |||||||||||| || |
|
|
| T |
37697567 |
gttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaac |
37697468 |
T |
|
| Q |
214 |
acctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaa |
313 |
Q |
| |
|
|||||| | | | ||||| |||||||||||| | ||||| ||| | ||| | || | | | |||| ||| |||||| | |||||| ||| |
|
|
| T |
37697467 |
acctcattgattgtaatcttgcaaataataactttagcggtagcatcccaattgtttatggaaatttaatcaaattggaatatttagcactttcctctaa |
37697368 |
T |
|
| Q |
314 |
taacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaa |
413 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||| | || |||||| |||| |||||| ||||| ||| ||| ||| |||||||| ||| || |
|
|
| T |
37697367 |
caacctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttaggtttatcatttaacaaactagttgggccaattccaattgaa |
37697268 |
T |
|
| Q |
414 |
atcaccaaattttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgt |
507 |
Q |
| |
|
||||| ||| |||||| || || ||| |||| | ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
37697267 |
atcacaaaacgttccaaattgagttatgtgtttttggatgataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgt |
37697174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 115 - 403
Target Start/End: Original strand, 37412657 - 37412945
Alignment:
| Q |
115 |
ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca |
214 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| | || ||||| || |||||| ||| ||||| || ||| ||||| ||||||| ||| |||| |
|
|
| T |
37412657 |
ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcaca |
37412756 |
T |
|
| Q |
215 |
cctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaat |
314 |
Q |
| |
|
|||||| ||| | ||||| | | ||| ||| | |||| |||||| | || ||||||| ||||||| |||||||| |||||| |||||| ||| |
|
|
| T |
37412757 |
tctcacttacttggatcttgaacaaaatgcctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaac |
37412856 |
T |
|
| Q |
315 |
aacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat |
403 |
Q |
| |
|
||| | | ||| ||| |||| ||||||||||| |||||| |||| |||||| ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
37412857 |
aacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat |
37412945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 585 - 682
Target Start/End: Original strand, 37392743 - 37392840
Alignment:
| Q |
585 |
ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt |
682 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||| ||||| ||||| || ||||| |
|
|
| T |
37392743 |
ctctcaaataacaacctacatggtcattttccaaattcaatatttgaactccaaaatcttaccaacttagatttgtcttcaacaaacttaagtggtgt |
37392840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 37392262 - 37392373
Alignment:
| Q |
38 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
137 |
Q |
| |
|
|||||||||| | || |||||| |||||||||||||||| || |||| ||||||| | || ||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
37392262 |
tgaaattcccaaatctataggccatttgaagtatcttactcaattagtcctttcatattgcaatttagatgggatggttcctctatctttgtggaacctc |
37392361 |
T |
|
| Q |
138 |
actcaactaaca |
149 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37392362 |
actcaactaaca |
37392373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 37533690 - 37533576
Alignment:
| Q |
304 |
tttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat |
403 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||||||| | ||||||||| |||| |||||||| |||| |||||| | ||| ||| ||| ||| ||||| |
|
|
| T |
37533690 |
tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaat |
37533591 |
T |
|
| Q |
404 |
tccgattcaaatcac |
418 |
Q |
| |
|
||| ||| ||||||| |
|
|
| T |
37533590 |
tccaattgaaatcac |
37533576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 286 - 559
Target Start/End: Original strand, 37400364 - 37400637
Alignment:
| Q |
286 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaa |
385 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||| |||| |||||| ||| ||||||| | ||| |
|
|
| T |
37400364 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttatcatctaa |
37400463 |
T |
|
| Q |
386 |
taaattagatggcccaattccgattcaaatcaccaaattttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactgg |
485 |
Q |
| |
|
||| ||| |||||||||||| ||| ||||||| ||| ||| || || | ||| |||| ||||| ||||| |||||||||||||| ||| |
|
|
| T |
37400464 |
caaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttgggtgataacatgttaaatggaacaattccacattgg |
37400563 |
T |
|
| Q |
486 |
tgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagggtcaattggtgagttctc |
559 |
Q |
| |
|
|||||||| ||||||||||||| | |||||| |||| | ||| | |||||||||| |||||||||||||| |
|
|
| T |
37400564 |
tgttattctttgccttcgttgttagagttgtacctcagcaacaacaatctcacagggttcattggtgagttctc |
37400637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 37400116 - 37400297
Alignment:
| Q |
38 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
137 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| | |||| ||||| || ||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
37400116 |
tgaaattccctattccataggccaattgaagtatcttactcgattagatttttcacggtgcaatttagatgggatggttcctctatctttgtggaacctc |
37400215 |
T |
|
| Q |
138 |
actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
219 |
Q |
| |
|
|| ||||||||| | || ||||| || ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37400216 |
acccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37400297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 37533956 - 37533775
Alignment:
| Q |
38 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
137 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| ||| ||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
37533956 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcattctgcaattttgatggaatggttcctctatctttgtggaacctc |
37533857 |
T |
|
| Q |
138 |
actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
219 |
Q |
| |
|
|| ||||||||| | || || || || ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37533856 |
acccaactaacatatttggatctttcacataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37533775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 585 - 682
Target Start/End: Complemental strand, 37697030 - 37696933
Alignment:
| Q |
585 |
ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt |
682 |
Q |
| |
|
||||| |||||||| |||| |||| ||||||||||||||||||| || ||||||| ||||| | ||| ||||||||||||||||||||| ||||| |
|
|
| T |
37697030 |
ctctctaataacaacctacaaggtcattttccaaattcaatatttcaactccaaaaccttaccgagttatatttgtcatcaaccaacttgagtggtgt |
37696933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 37703524 - 37703343
Alignment:
| Q |
38 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
137 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| | ||||||||||||||||||| ||| |
|
|
| T |
37703524 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcacattgcaatttagatgggatggttcctctatctttgtggaatctc |
37703425 |
T |
|
| Q |
138 |
actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
219 |
Q |
| |
|
|| ||||||||| | || ||||| || ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37703424 |
acccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37703343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 462 - 682
Target Start/End: Complemental strand, 37533532 - 37533312
Alignment:
| Q |
462 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagggtcaattggtgagttctcta |
561 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||||||||||| | ||| | |||| | ||| | |||||||||| ||||||||||| || | |
|
|
| T |
37533532 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttacacctcagcaacaaccacctcacagggttcattggtgagttttcaa |
37533433 |
T |
|
| Q |
562 |
ctagttcattgaattatctattcctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtc |
661 |
Q |
| |
|
| ||| ||| | ||| | ||||| |||||||| |||| |||| ||||||||||||||||||| || ||||||||||||| ||||| |||||| |
|
|
| T |
37533432 |
catattctttgcaatatttggatctctctaataacaacctacaaggtcattttccaaattcaatatttcaactccaaaatcttaccgacttatatttgtc |
37533333 |
T |
|
| Q |
662 |
atcaaccaacttgagaggtgt |
682 |
Q |
| |
|
||| || ||||| || ||||| |
|
|
| T |
37533332 |
atccacaaacttaagtggtgt |
37533312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 37712480 - 37712299
Alignment:
| Q |
38 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
137 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| | ||||||||||||||||||| ||| |
|
|
| T |
37712480 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcacattgcaattttgatgggatggttcctctatctttgtggaatctc |
37712381 |
T |
|
| Q |
138 |
actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
219 |
Q |
| |
|
|| ||||||||| | || ||||| || || || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37712380 |
acccaactaacacatttggacctttcattgaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37712299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 326 - 418
Target Start/End: Original strand, 37392484 - 37392576
Alignment:
| Q |
326 |
ccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac |
418 |
Q |
| |
|
|||||||||||||||| | ||||||||| | | |||||| | ||||||||||| | ||| ||| ||| |||||||||||| |||||||||| |
|
|
| T |
37392484 |
ccaagttccatcatcactttttcatctacccaacctttcttttttagatttatcatctaacaaactagttggcccaattccagttcaaatcac |
37392576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 37595103 - 37595069
Alignment:
| Q |
115 |
ttcctctatctttgtggaacctcactcaactaaca |
149 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37595103 |
ttcctctatctttgtggaacctcacccaactaaca |
37595069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 462 - 766
Target Start/End: Complemental strand, 14553542 - 14553238
Alignment:
| Q |
462 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagggtcaattggtgagttctcta |
561 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||||||||||| | ||| | |||| || ||| | |||||||||| ||||||||||| || | |
|
|
| T |
14553542 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcgacaaccacctcacagggttcattggtgagttttcaa |
14553443 |
T |
|
| Q |
562 |
ctagttcattgaattatctattcctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtc |
661 |
Q |
| |
|
|| ||| ||| | | | | ||||| |||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
14553442 |
cttattctttgcaatctttggatctctcaaataacaacctacaaggtcattttccaaattcaatatttgaactccaaaatcttaccgacttatatttgtc |
14553343 |
T |
|
| Q |
662 |
atcaaccaacttgagaggtgtagtagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaac |
761 |
Q |
| |
|
||| || |||||||| ||||| || || ||| || | ||||| || || ||| ||| | || |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
14553342 |
atccacaaacttgagtggtgttgtggattttcaccaattttcaaaattaaaaaaactaaattccctcgatctttcacacaatagttttatttctatcaac |
14553243 |
T |
|
| Q |
762 |
tttga |
766 |
Q |
| |
|
|||| |
|
|
| T |
14553242 |
attga |
14553238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 14553907 - 14553783
Alignment:
| Q |
25 |
ctgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatc |
124 |
Q |
| |
|
|||| ||||| | ||||||||| ||||||||||| | ||||||| |||||| ||||||| ||||||| | || ||||| |||| | |||||||||| |
|
|
| T |
14553907 |
ctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcatttagtcctttcagattgcaatttagatgggatggttcctctatc |
14553808 |
T |
|
| Q |
125 |
tttgtggaacctcactcaactaaca |
149 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14553807 |
tttgtggaacctcactcaactaaca |
14553783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 16842188 - 16842361
Alignment:
| Q |
46 |
cctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcactcaact |
145 |
Q |
| |
|
||||||||||||| | || |||| |||||| ||||||| ||||||| || ||||| |||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
16842188 |
cctattccataggtcaattaaagtctcttactcatttagtcctttcattttgcaattttgatgggatggttcctctatctttgtggaacctcactcaact |
16842287 |
T |
|
| Q |
146 |
aacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
219 |
Q |
| |
|
|||| | || || || || | ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
16842288 |
aacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
16842361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 462 - 682
Target Start/End: Original strand, 16842604 - 16842824
Alignment:
| Q |
462 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagggtcaattggtgagttctcta |
561 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| ||||||||||||| | ||||| || | ||| | |||||||||| |||||||||||||| | |
|
|
| T |
16842604 |
ttaaatggaacaattccaaattggtgttattctttgccttcgttgttaaagttgtcccttcgctacaaccatctcacagggttcattggtgagttctcaa |
16842703 |
T |
|
| Q |
562 |
ctagttcattgaattatctattcctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtc |
661 |
Q |
| |
|
| ||| ||||| | | | | ||||| |||||||| |||| || | |||||||||||||||||||||| ||||||||||||| | ||| ||| || |
|
|
| T |
16842704 |
catattctttgaagtctttgtatctctctaataacaacctacaaggccattttccaaattcaatatttgaactccaaaatcttaccgccctagatttatc |
16842803 |
T |
|
| Q |
662 |
atcaaccaacttgagaggtgt |
682 |
Q |
| |
|
|||||| |||||||| ||||| |
|
|
| T |
16842804 |
atcaacaaacttgagtggtgt |
16842824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 418
Target Start/End: Original strand, 16842460 - 16842560
Alignment:
| Q |
318 |
ctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatca |
417 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||||| || | ||||||| ||| ||||||| ||||| ||| | | |||||||||||| ||| |||||| |
|
|
| T |
16842460 |
ctaacaggccaagttccatcatcactttttcatctaccttatctttctaatttatatttatcatttaacaaactggttggcccaattccaattgaaatca |
16842559 |
T |
|
| Q |
418 |
c |
418 |
Q |
| |
|
| |
|
|
| T |
16842560 |
c |
16842560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 507
Target Start/End: Original strand, 24217468 - 24217513
Alignment:
| Q |
462 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
507 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
24217468 |
ttaaatggaacaattccgcaatggtgttattccttgccttcgttgt |
24217513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 24217330 - 24217371
Alignment:
| Q |
324 |
ggccaagttccatcatcattgtttcatctaactcagctttct |
365 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
24217330 |
ggccaaattccatcatcattgtttaatctaactcaactttct |
24217371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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