View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707-Insertion-29 (Length: 461)
Name: NF1707-Insertion-29
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707-Insertion-29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 35467084 - 35466631
Alignment:
| Q |
8 |
agaagatgacttacattgatgatatgttttacttaacctcgaaattccatttagtagctatgtaggattctttgtatgcagttgccgacannnnnnnctt |
107 |
Q |
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| T |
35467084 |
agaagatgacttacattgatgatatgttttacttaacctcgaaattccatttagtagctatgtaggattctttgtatgcagttgccgacatttttttctt |
35466985 |
T |
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| Q |
108 |
tctctctattaaaattaatgagtctgaagaaggtgnnnnnnnctgtctacaaggacatgtacatttctaaaatttatgaacttgttttgcttgtttggtt |
207 |
Q |
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| T |
35466984 |
tctctctattaaaattaatgagtttgaagaaggtgaaaaaaactgtctacaaggacatgtacatttctaaaatttatgaacttgttttgcttgtttggtt |
35466885 |
T |
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| Q |
208 |
actaagaaaacaatttatgaggtcccaagtgtaaaacgttttattcttttcaaactaataggaccacgtcttcttatcaagtttccacaaattaaaggtg |
307 |
Q |
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| T |
35466884 |
actaagaaaacaatttatgaggtcccaagtgtaaaacgttttattcttttcaaactaataggaccacatcttcttatcaagtttccacaaattaaagctg |
35466785 |
T |
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| Q |
308 |
atttttatcacacttgtgtctctaagatgctcttgtctccactttaaagaagaaaattaaaaggaccacgtcttcttatcaagtttccacaaactattta |
407 |
Q |
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| T |
35466784 |
atttttatcacacttgtgtctctaagatgctcttgtctccactttaaagaagaaaattaaaaggaccacgtcttcttatcaagtttccacaaactattta |
35466685 |
T |
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| Q |
408 |
ctctccttgtgggacttgttatatgatcaagttgcaagtacaaaatcatcgaga |
461 |
Q |
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| T |
35466684 |
ctctccttgtgggacttgttatatgattaagttgcaagtacaaaatcatcgaga |
35466631 |
T |
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