View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707-Insertion-3 (Length: 823)
Name: NF1707-Insertion-3
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 170 - 555
Target Start/End: Original strand, 35807638 - 35808025
Alignment:
| Q |
170 |
ttcaattgagctattatgaatccgaatatttaagattgatattgagaagacttatcatagat--tcgttgaaaattcatctttaatgtctttagacttgt |
267 |
Q |
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| T |
35807638 |
ttcaattgagctattatgaatccgaatatttaagattgatattgagaagacttatcatatatattcgttaaaaattcatcttcaatctctttagacttgt |
35807737 |
T |
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| Q |
268 |
aaattctttgagaaacttatcaaaatcattcatcaatgcatttatttgccgttttttcaaaattttatgtgaaatgttgataaatttattttgtcttttc |
367 |
Q |
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| T |
35807738 |
aaattctctgagaaacttatcaaaatcattcatcaatacatttatttatcgttttttcaaaattttatgtgaaatgttgataaacttattttgtcttttc |
35807837 |
T |
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| Q |
368 |
tcataggtattcgaaaaggcaattacgtttatannnnnnnngttatttgtatagactatctatcgcatattattactaattaaatgaaaccaaattattg |
467 |
Q |
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| T |
35807838 |
tcatgggtattcgaaaaggcaattacttttatactttttttgttatttgtatgaactatctatcgtatattattactaatcaagtgaaactaaattattg |
35807937 |
T |
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| Q |
468 |
aataaatgttaaatcaactttttctaagtcatctgatcaagatcgaacattcattcattgatatcataattgtaatcacgtcaaatcc |
555 |
Q |
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| T |
35807938 |
aataaaagttaaatcaactttttctaagtcatctgatcaagatcgaatattcattcattgatatcataattgtaatcacgtcaaatcc |
35808025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 579 - 821
Target Start/End: Original strand, 35808147 - 35808388
Alignment:
| Q |
579 |
aaatagttgcttctaaaatataattattttgttgaattaaataaatatttggaccagaccggttgctgaatggtcgcaactttgacgagtccacattcgg |
678 |
Q |
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| T |
35808147 |
aaatggttgcttctaaaatctaattattttgttgaattaaataaatatttggaccagaccggttgctgaatggtcgcaactttgacgagtccacattcgg |
35808246 |
T |
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| Q |
679 |
tagaactgcagcaacgtttttctcattctcattcccaaacccaaaatctgaattgaattctctactgcaaatccaaatcaagcattactctctccggcat |
778 |
Q |
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| T |
35808247 |
tacaactgcagcaacgtttttctcattctcattcccaaacccaaaatctgaattgaattctctactgcaaatccaaatcaagcattactctctccggcat |
35808346 |
T |
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| Q |
779 |
ggcagcgacatctcagggctcatctcttctgcttctccgccac |
821 |
Q |
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| T |
35808347 |
ggcagcgacatctca-ggctcatctcttctgcttctccgccac |
35808388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 35807500 - 35807583
Alignment:
| Q |
8 |
catgacagaaaccaaaccaaggaagggttttaggtggagggagatatcacaacttcttattgctttgtttttctttttggatctatg |
94 |
Q |
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| T |
35807500 |
catggcagaaaccaaaccaaggaagggttttaggtggagggaaatatcacaacttctttttgctttgttt---tttttggatctatg |
35807583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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