View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707-Insertion-32 (Length: 576)

Name: NF1707-Insertion-32
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707-Insertion-32
NF1707-Insertion-32
[»] chr5 (6 HSPs)
chr5 (8-546)||(39732270-39732809)
chr5 (14-59)||(32676884-32676929)
chr5 (415-502)||(39868226-39868313)
chr5 (415-502)||(39901700-39901787)
chr5 (22-61)||(40837665-40837704)
chr5 (461-502)||(39913661-39913702)
[»] chr2 (3 HSPs)
chr2 (14-59)||(32201079-32201124)
chr2 (14-59)||(9929492-9929537)
chr2 (18-59)||(26575930-26575971)
[»] chr7 (5 HSPs)
chr7 (14-60)||(44572669-44572715)
chr7 (14-59)||(27616186-27616231)
chr7 (18-59)||(8799619-8799660)
chr7 (14-61)||(45216171-45216216)
chr7 (22-59)||(10678212-10678249)
[»] chr8 (1 HSPs)
chr8 (16-60)||(15850714-15850758)
[»] chr3 (1 HSPs)
chr3 (14-62)||(43922199-43922247)
[»] chr1 (3 HSPs)
chr1 (14-58)||(23431728-23431772)
chr1 (16-59)||(10171701-10171744)
chr1 (14-59)||(32740711-32740756)
[»] chr6 (1 HSPs)
chr6 (14-57)||(12843766-12843809)
[»] chr4 (2 HSPs)
chr4 (14-59)||(54305517-54305562)
chr4 (14-59)||(658677-658722)


Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Original strand, 39732270 - 39732809
Alignment:
Q  8 tcaacatgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732270 tcaacatgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatg 39732369  T
Q  108 aatgatttacgatacggttatgtgggcttattttggtatatggttcatgaacttcaaaatcatattcacaaactcaagacatatacaccaatcatgttca 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39732370 aatgatttacgatacggttatgtgggcttattttggtatatggttcatgaacttcaaaatcatattcacaaactcatgacatatacaccaatcatgttca 39732469  T
Q  208 tgtacttctttagccattctacattgctggactaagcatctgcgggactactcttatttgttttacctctccaagttttcagataattcaagtcttgata 307  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732470 tgtacttctttagccattctacattgctggactaaacatctgcgggactactcttatttgttttacctctccaagttttcagataattcaagtcttgata 39732569  T
Q  308 cttacttaattgctcttttcattta-ttttatcaacattagcaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttct 406  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732570 cttacttaattgctcttttcatttatttttatgaacattagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttct 39732669  T
Q  407 ctatttaaattcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtatcccc 506  Q
    | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732670 ccatttaaattcacatggagaattgaaagattttcttggaggaacgagataaagctctgttcagatgtatttgatgttgggggctataaatggtatcccc 39732769  T
Q  507 cgaatctattcatgatgtttatctttctatttcagttgac 546  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39732770 cgaatctattcatgatgtttatctttctatttcagttgac 39732809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 32676884 - 32676929
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  32676884 tgtcagtgtcgtgtcaggtgtccgtgtcggagtccatgcttcatag 32676929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 502
Target Start/End: Complemental strand, 39868313 - 39868226
Alignment:
Q  415 attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat 502  Q
    |||||||||||||||||   ||||||||| || ||||   |||||||||| ||||||||||||||| |||||||| || |||||||||    
T  39868313 attcacatggagaattgggggattttcttcgataaatacaataaagctctattcagatgtatttgaagttgggggttacaaatggtat 39868226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 502
Target Start/End: Complemental strand, 39901787 - 39901700
Alignment:
Q  415 attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat 502  Q
    ||||| ||||| |||||| |||||||||  || ||||| || | || ||| ||||||||||||||| ||||| |||||||||||||||    
T  39901787 attcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtat 39901700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 40837704 - 40837665
Alignment:
Q  22 tcgtgtcaggtgttcgtgtcggagtccatgcttcataggt 61  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  40837704 tcgtgtcaggtgtccgtgtcggagtccatacttcataggt 40837665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 502
Target Start/End: Complemental strand, 39913702 - 39913661
Alignment:
Q  461 ctctgttcagatgtatttgatgttgggggctataaatggtat 502  Q
    |||| ||||||||||||||| | |||||||||||||||||||    
T  39913702 ctctattcagatgtatttgaagctgggggctataaatggtat 39913661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 32201079 - 32201124
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  32201079 tgtcagtgtcgtgtcaggtgttcgtgttggagtccatgcttcatag 32201124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 9929537 - 9929492
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||    
T  9929537 tgtcagtgtcgtgtcaagtgtttgtgtcgtagtccatgcttcatag 9929492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 26575971 - 26575930
Alignment:
Q  18 agtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  26575971 agtgttgtgtcaggtgtccgtgtcggagtccatgcttcatag 26575930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 44572669 - 44572715
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatagg 60  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  44572669 tgtcagtgtcgtgtcaggagtccgtgtcggagtccatgcttcatagg 44572715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 27616231 - 27616186
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  27616231 tgtcagtatcgtgtcaggtgtacgtgtcggagtccatgcttcatag 27616186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 8799660 - 8799619
Alignment:
Q  18 agtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  8799660 agtgtcgtgtcaggtgtccgtgtcggagtccatgcgtcatag 8799619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 45216171 - 45216216
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggt 61  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||||    
T  45216171 tgtcagtgtcgtgtcaggtgtccgtgt--gagtccatgcttcataggt 45216216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 10678249 - 10678212
Alignment:
Q  22 tcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  10678249 tcgtatcaggtgtccgtgtcggagtccatgcttcatag 10678212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 15850714 - 15850758
Alignment:
Q  16 tcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatagg 60  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  15850714 tcagtgtcgtgtcaggtgtccgtgtcggagtccatgtttcatagg 15850758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 43922199 - 43922247
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggta 62  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  43922199 tgtcagtgtcgtgtcaggtatctgtgtcggagtccatgcttcataggta 43922247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 23431772 - 23431728
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcata 58  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  23431772 tgtcagtgtcgtatcaggtgtccgtgtcggagtccatgcttcata 23431728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 10171701 - 10171744
Alignment:
Q  16 tcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  10171701 tcagtgtcgtgtccggtgtccgtgttggagtccatgcttcatag 10171744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 32740756 - 32740711
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    ||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  32740756 tgtcagtgtcgtgtcagatgttcgtgtcgaagtctgtgcttcatag 32740711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 12843809 - 12843766
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcat 57  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  12843809 tgtcagtgtcgtgtcaagtgtccgtgtcggagtccatgcttcat 12843766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 54305562 - 54305517
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  54305562 tgtcagtgttgtgtcaggtgtccgtgttggagtccatgcttcatag 54305517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 658677 - 658722
Alignment:
Q  14 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 59  Q
    ||||||||||||||| ||||| | ||||||||||| ||||||||||    
T  658677 tgtcagtgtcgtgtcgggtgtccatgtcggagtccgtgcttcatag 658722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University