View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707-Insertion-33 (Length: 775)

Name: NF1707-Insertion-33
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707-Insertion-33
NF1707-Insertion-33
[»] chr5 (18 HSPs)
chr5 (278-775)||(10105773-10106270)
chr5 (338-775)||(10102688-10103119)
chr5 (334-775)||(10212066-10212504)
chr5 (515-737)||(10109223-10109445)
chr5 (520-737)||(10209698-10209915)
chr5 (515-735)||(13855940-13856160)
chr5 (177-297)||(10103167-10103287)
chr5 (8-115)||(10106293-10106400)
chr5 (540-738)||(12109334-12109534)
chr5 (514-656)||(9660198-9660340)
chr5 (607-737)||(12104608-12104738)
chr5 (596-767)||(9674763-9674937)
chr5 (578-656)||(10215906-10215984)
chr5 (604-658)||(37278735-37278789)
chr5 (600-659)||(3467667-3467726)
chr5 (680-736)||(10219129-10219185)
chr5 (515-589)||(9674066-9674141)
chr5 (50-104)||(39233014-39233068)
[»] chr8 (6 HSPs)
chr8 (514-659)||(31555088-31555233)
chr8 (514-659)||(31878236-31878381)
chr8 (530-738)||(31558189-31558397)
chr8 (554-659)||(4042198-4042303)
chr8 (605-652)||(13568429-13568476)
chr8 (21-126)||(41527920-41528025)
[»] chr1 (13 HSPs)
chr1 (555-662)||(10542389-10542496)
chr1 (532-662)||(42202366-42202496)
chr1 (532-662)||(42211234-42211364)
chr1 (532-658)||(45151994-45152120)
chr1 (532-693)||(42409564-42409724)
chr1 (532-659)||(45316388-45316515)
chr1 (554-662)||(2176315-2176423)
chr1 (532-659)||(43014303-43014430)
chr1 (534-658)||(51795018-51795142)
chr1 (569-708)||(42217246-42217385)
chr1 (600-660)||(42417640-42417700)
chr1 (21-126)||(45919124-45919229)
chr1 (21-126)||(49880859-49880964)
[»] chr7 (9 HSPs)
chr7 (514-659)||(3647026-3647171)
chr7 (515-659)||(3649475-3649619)
chr7 (515-650)||(3657601-3657736)
chr7 (574-654)||(3641211-3641291)
chr7 (540-587)||(3656176-3656223)
chr7 (69-151)||(11699145-11699227)
chr7 (540-619)||(3648192-3648270)
chr7 (595-642)||(19523283-19523330)
chr7 (70-151)||(40430308-40430390)
[»] chr4 (11 HSPs)
chr4 (515-659)||(17889422-17889566)
chr4 (549-662)||(25698805-25698918)
chr4 (589-660)||(36790834-36790905)
chr4 (558-659)||(49588157-49588258)
chr4 (563-651)||(46362507-46362595)
chr4 (605-644)||(20918686-20918725)
chr4 (21-126)||(6553616-6553721)
chr4 (50-125)||(35695390-35695465)
chr4 (68-151)||(37732818-37732901)
chr4 (21-126)||(313399-313504)
chr4 (29-109)||(56210422-56210500)
[»] chr3 (6 HSPs)
chr3 (543-698)||(46446175-46446330)
chr3 (552-659)||(21884053-21884160)
chr3 (69-109)||(35608621-35608661)
chr3 (607-654)||(35717255-35717302)
chr3 (50-147)||(14044566-14044662)
chr3 (50-126)||(50240554-50240630)
[»] chr2 (5 HSPs)
chr2 (532-650)||(26568347-26568465)
chr2 (558-659)||(5900525-5900626)
chr2 (595-647)||(43633443-43633495)
chr2 (50-101)||(10399694-10399745)
chr2 (604-657)||(2341338-2341391)
[»] chr6 (5 HSPs)
chr6 (595-659)||(33891592-33891656)
chr6 (58-104)||(3991405-3991451)
chr6 (604-658)||(27868671-27868725)
chr6 (50-137)||(31736885-31736972)
chr6 (75-136)||(17427740-17427801)


Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 278 - 775
Target Start/End: Complemental strand, 10106270 - 10105773
Alignment:
Q  278 agacccctatcggatggtctcttacctatacccacccggggcaggcctctcctatttcactttgaggggatgatgattaaaatt-aaatgctactctatg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10106270 agacccctatcggatggtctcttacctatacccacccggggcaggccgcccctatttcactttgaggggatgatgattaaaatttaaatgctactctatg 10106171  T
Q  377 ctgttttgtcaagagtcactcttctagaaacaaattagggaaactattgccaacaatgaattttacaagtttttaaataactcccttaaacaaatagcat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10106170 ctgttttgtcaagagtcactcttctagaaacaaattagggaaagtattaccaacaatgaattttacaagtttttaaataactaccttaaacaaatagcat 10106071  T
Q  477 accatattacatagcaactacattnnnnnnngaatacaaaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtat 576  Q
    ||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10106070 accatattacatagcaactacattaaaaaaagaatacaaaaaaattgaactaaatttgcagagccctcaataaagaggactcttccaaaaactagcgtat 10105971  T
Q  577 gccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttnnnnnnngtagaga 676  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  10105970 gccgctaattatgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttaaaaaaagtagaga 10105871  T
Q  677 tcctttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgtgggacttttgtcagacactaattaactagactacttcctttctccc 775  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  10105870 tcctttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgtgggac-tttgtcagacactaattaacttgactacttccattctccc 10105773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 338 - 775
Target Start/End: Complemental strand, 10103119 - 10102688
Alignment:
Q  338 tttgaggggatgatgattaaaattaaatgctactctatgctg---ttttgtcaagagtcactcttctagaaacaaattagggaaactattgccaacaatg 434  Q
    |||||||||||||||||||||| |||||||||||||||||||   ||||||| |||||||||| ||||||||||||||||||||  |||| ||||||| |    
T  10103119 tttgaggggatgatgattaaaaataaatgctactctatgctgctgttttgtcgagagtcactcctctagaaacaaattagggaag-tattaccaacaacg 10103021  T
Q  435 aattt-tacaagtttttaaataactcccttaaacaaatagcataccatattacatagcaactacattnnnnnnn--gaatacaaaaatattgaactaaat 531  Q
    ||||| |||||||| ||        || |||||  |   |||||||| || |||||||||| ||||          ||||||||||||||||||||||||    
T  10103020 aatttatacaagttgtt--------ccattaaagtag--gcatacca-ataacatagcaaccacataaaaataaaagaatacaaaaatattgaactaaat 10102932  T
Q  532 ttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 631  Q
    ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10102931 ttgcagagccctcaatgaagaggactcttccaaaaactagtgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 10102832  T
Q  632 cgctatgtgatcatcacacggctccgt-gcttnnnnnnngtagagatcctttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgtg 730  Q
    ||||||||||||||||||| |||||||   ||       |  ||| || |||| ||||||| | |||| ||||||||||||||||||| ||| |||||||    
T  10102831 cgctatgtgatcatcacacagctccgtaaattttaacaagctgaggtcttttcgttttataagtaagcagcatagtttagtttatgaattggtcgatgtg 10102732  T
Q  731 ggacttttgtcagacactaattaactagactacttcctttctccc 775  Q
    |||  ||| || ||||| |||||||||||||||||||||||||||    
T  10102731 gga-gtttatccgacaccaattaactagactacttcctttctccc 10102688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 334 - 775
Target Start/End: Original strand, 10212066 - 10212504
Alignment:
Q  334 tcactttgaggggatgatgattaaaattaaatgctactctatgctgttttgtcaagagtcactcttctagaaacaaattagggaaactattgccaacaat 433  Q
    ||||||||||||||||||||||||| |||| | |||||||||| ||||||||| |||||||||| |||||||| |||||||||||  |||| ||||||||    
T  10212066 tcactttgaggggatgatgattaaa-ttaattcctactctatgttgttttgtctagagtcactcctctagaaaaaaattagggaag-tattaccaacaat 10212163  T
Q  434 gaattt-tacaagtttttaaataactcccttaaacaaatagcataccatattacatagcaactacattnnnnnnngaatacaaaaatattgaactaaatt 532  Q
    |||||  |||||||  | ||| ||||||||||||||| |||||||||| || |||||| ||| |||         |||||  ||||||||| |||||| |    
T  10212164 gaattaatacaagtggt-aaagaactcccttaaacaagtagcatacca-ataacatagtaaccacaaaaaaacaagaataagaaaatattgtactaaaat 10212261  T
Q  533 tgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttc 632  Q
    |||||| || ||  | | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  10212262 tgcagagccttcggtgaggaggactcttccaaaaactagcgtatgccgctaattgtgacactcacacagtattctttagtaaaaggcgaaagaatagttc 10212361  T
Q  633 gctatgtgatcatcacacggctccgtgcttnnnnnnngtagagatcctttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgtggg 732  Q
    |||||||||||||||||||||||||| | |       |||||| || ||||||||||||||  | | ||||||||||||||||| | |||  ||||||||    
T  10212362 gctatgtgatcatcacacggctccgtacctattggaggtagaggtcatttcattttatatgtgatcagcatagtttagtttatgcattggtagatgtggg 10212461  T
Q  733 acttttgtcagacactaattaactagactactt-cctttctccc 775  Q
    ||  || |||||||| |||||||| |||||||| ||||||||||    
T  10212462 ac-attatcagacacaaattaacttgactacttccctttctccc 10212504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 515 - 737
Target Start/End: Complemental strand, 10109445 - 10109223
Alignment:
Q  515 aaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 614  Q
    |||| ||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10109445 aaaaaatttaactaaaattgcagagccctccataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 10109346  T
Q  615 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttnnnnnnngtagagatcctttcattttatatgaaagctgcatagtttagttta 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |        | |||| | || || ||||||||| ||||||||||||||||||||    
T  10109345 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgatctttacaaggagaggttctatctttttatatgcaagctgcatagtttagttta 10109246  T
Q  715 tgaactgggcgatgtgggacttt 737  Q
    |||| ||||||||||||||||||    
T  10109245 tgaattgggcgatgtgggacttt 10109223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 520 - 737
Target Start/End: Original strand, 10209698 - 10209915
Alignment:
Q  520 attgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggc 619  Q
    ||||||||||| ||||||| ||||| |||||||| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||    
T  10209698 attgaactaaaattgcagagccctccataaagagaactcttccaaaaactaacgtatgccactcattgtgacgctcacacggtattctttagtaaaaggc 10209797  T
Q  620 gaaagaatagttcgctatgtgatcatcacacggctccgtgcttnnnnnnngtagagatcctttcattttatatgaaagctgcatagtttagtttatgaac 719  Q
    ||||||||||||||||||||| |||||||||||||||||| ||       | | || |||| || ||||||||| ||||||||||||||||||||||||     
T  10209798 gaaagaatagttcgctatgtgttcatcacacggctccgtgattttaacaaggataggtcctatctttttatatgcaagctgcatagtttagtttatgaat 10209897  T
Q  720 tgggcgatgtgggacttt 737  Q
    ||||||||||||||||||    
T  10209898 tgggcgatgtgggacttt 10209915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 515 - 735
Target Start/End: Complemental strand, 13856160 - 13855940
Alignment:
Q  515 aaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 614  Q
    |||||||||||||||| ||||| | |||||  | ||||||||||| ||||||||||| ||||||||||||| |  |||||||||||||||||||||||||    
T  13856160 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 13856061  T
Q  615 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttnnnnnnngtagagatcctttcattttatatgaaagctgcatagtttagttta 714  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||       |||||| ||||||| |||||||||  | |||||||||||||||||    
T  13856060 aaggcgaaagaatagttcgctatgtgatcatcactcggctccgtgcttgtaagaggtagaggtcctttctttttatatgtgaactgcatagtttagttta 13855961  T
Q  715 tgaactgggcgatgtgggact 735  Q
    |||| |||  |||||||||||    
T  13855960 tgaattggttgatgtgggact 13855940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 10103287 - 10103167
Alignment:
Q  177 cctttagtctggcctttttaattatataaacttctaatagaatcttaggcttatctaattaagaaaaaacttggtcaaaggtctgatgtagcctaggacg 276  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  10103287 cctttagtttggcctttttaattaaataaacttctaatagaatcttaggcttatctatttaagaaaaaacttggtcaaaggtctgatgtagcctaggccg 10103188  T
Q  277 tagacccctatcggatggtct 297  Q
    |||||||||  ||||||||||    
T  10103187 tagacccctggcggatggtct 10103167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 10106400 - 10106293
Alignment:
Q  8 gtatcatacaatatgatggtgtagaattatcaatattcatcgaattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatcattttaag 107  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  10106400 gtatcatacgatatgatgatgtagaattatcaatattcatcgaattacctaaaaactccctaaaaatttcaatttaaatatgatatatcatcattttaaa 10106301  T
Q  108 ttaaacaa 115  Q
    ||||||||    
T  10106300 ttaaacaa 10106293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 540 - 738
Target Start/End: Original strand, 12109334 - 12109534
Alignment:
Q  540 ccctcaataaagaggactctt-ccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatg 638  Q
    |||||||| |||| ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12109334 ccctcaatgaagatgactctttccaaaaactagcgtatgccacaaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtttgctatg 12109433  T
Q  639 tgatcatcacacggctccgtgcttnnnnnnngtagagatcctttcattttatatgaaagctgcatagttt-agtttatgaactgggcgatgtgggacttt 737  Q
    |||||||||  |||||||||||||       |||||| || |||||||||||||   ||  || |||||| |||||||| | ||| ||||||||||||||    
T  12109434 tgatcatcaggcggctccgtgcttattggaggtagaggtcatttcattttatatatgagaagcttagtttcagtttatgcattggtcgatgtgggacttt 12109533  T
Q  738 t 738  Q
    |    
T  12109534 t 12109534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 514 - 656
Target Start/End: Original strand, 9660198 - 9660340
Alignment:
Q  514 aaaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagta 613  Q
    ||||||||||||||||| ||||||| | ||| || || |||||||||||||||||| || ||||| ||||||||||||| |||||| |||||||||||||    
T  9660198 aaaaatattgaactaaaattgcagagcactccatgaataggactcttccaaaaactggcatatgctgctaattgtgacgttcacacagtattctttagta 9660297  T
Q  614 aaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 656  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||    
T  9660298 aaaggcaaaataatagttcgctatgtgatcatcacaaggctcc 9660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 607 - 737
Target Start/End: Original strand, 12104608 - 12104738
Alignment:
Q  607 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttnnnnnnngtagagatcctttcattttatatgaaagctgcatagt 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       |||||| |||| || |||||||||  ||||||||| |    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttacaagaagtagaggtcctatctttttatatgtgagctgcataat 12104707  T
Q  707 ttagtttatgaactgggcgatgtgggacttt 737  Q
    |||||||||||| ||| ||||||||||||||    
T  12104708 ttagtttatgaattggtcgatgtgggacttt 12104738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 596 - 767
Target Start/End: Original strand, 9674763 - 9674937
Alignment:
Q  596 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggc---tccgtgcttnnnnnnngtagagatcctttcattttatat 692  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||   |||||||||       |||||| | |||| |||||||||    
T  9674763 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacggcggctccgtgctttaaaaaggtagaggttctttaattttatat 9674862  T
Q  693 gaaagctgcatagtttagtttatgaactgggcgatgtgggacttttgtcagacactaattaactagactacttcc 767  Q
    |  ||| ||||||||||| ||||| | |||  ||||||||||||| ||||||||| || ||||| ||||||||||    
T  9674863 gtgagcagcatagtttagcttatgcattggaggatgtgggactttagtcagacaccaactaacttgactacttcc 9674937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 578 - 656
Target Start/End: Original strand, 10215906 - 10215984
Alignment:
Q  578 ccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 656  Q
    ||||||||||| || |||||| |||||||||||||||||||| |||||||||||  ||||||||||| ||||| |||||    
T  10215906 ccgctaattgtaacactcacaaggtattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacacagctcc 10215984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 604 - 658
Target Start/End: Original strand, 37278735 - 37278789
Alignment:
Q  604 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgt 658  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctccgt 37278789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 600 - 659
Target Start/End: Original strand, 3467667 - 3467726
Alignment:
Q  600 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 659  Q
    |||||||||||||||||||||||||||||||| ||| || | ||||||||||||| ||||    
T  3467667 ggtattctttagtaaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtg 3467726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 680 - 736
Target Start/End: Original strand, 10219129 - 10219185
Alignment:
Q  680 tttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgtgggactt 736  Q
    |||||||||||| | |||| ||||||||||||||||||| |||  ||||||||||||    
T  10219129 tttcattttataagtaagcagcatagtttagtttatgaattggttgatgtgggactt 10219185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 589
Target Start/End: Original strand, 9674066 - 9674141
Alignment:
Q  515 aaaatattgaactaaatttgcagaaccctcaataaagaggactctt-ccaaaaactagcgtatgccgctaattgtg 589  Q
    |||| |||| |||||  ||||||| |||||||| |||| ||||||| |||||||||||| |||||||| |||||||    
T  9674066 aaaacattgtactaatattgcagagccctcaatgaagatgactctttccaaaaactagcatatgccgcaaattgtg 9674141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 39233068 - 39233014
Alignment:
Q  50 aattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatcatttt 104  Q
    |||||| |||||||||  |||||| |||||||||||||| |||||||| ||||||    
T  39233068 aattacatgaaaactcattaaaaacttcaatttaaatataatatatcaccatttt 39233014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 514 - 659
Target Start/End: Original strand, 31555088 - 31555233
Alignment:
Q  514 aaaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagta 613  Q
    ||||| ||| ||||||  ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31555088 aaaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagta 31555187  T
Q  614 aaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31555188 aaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31555233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 514 - 659
Target Start/End: Complemental strand, 31878381 - 31878236
Alignment:
Q  514 aaaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagta 613  Q
    ||||| ||| ||||||  ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31878381 aaaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagta 31878282  T
Q  614 aaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31878281 aaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31878236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 530 - 738
Target Start/End: Original strand, 31558189 - 31558397
Alignment:
Q  530 atttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatag 629  Q
    ||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31558189 atttgcagagccctcaatatagaggactcttctaaaaactaacgtatgccgctaattgtgacgttcacacggtattctttagtaaaaggcgaaagaatag 31558288  T
Q  630 ttcgctatgtgatcatcacacggctccgtgcttnnnnnnngtagagatcctttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgt 729  Q
    ||||||||||||||||||||||||||| |||||       |||||  | |||||| |||||||| |||| || | |||  ||||||| | ||| ||||||    
T  31558289 ttcgctatgtgatcatcacacggctccatgcttataaaaggtagaagtgctttcagtttatatgcaagcagcttggttgggtttatgcattggccgatgt 31558388  T
Q  730 gggactttt 738  Q
    |||||||||    
T  31558389 gggactttt 31558397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 554 - 659
Target Start/End: Original strand, 4042198 - 4042303
Alignment:
Q  554 gactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggc 653  Q
    |||||||||||||| | || ||||||| |||| ||||||  | ||| |||||||||||| |||||||||||||||||| ||| || | ||||||||||||    
T  4042198 gactcttccaaaaattggcatatgccgttaatagtgacgagcccacagtattctttagtcaaaggcgaaagaatagtttgctttgagctcatcacacggc 4042297  T
Q  654 tccgtg 659  Q
    | ||||    
T  4042298 tgcgtg 4042303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 605 - 652
Target Start/End: Original strand, 13568429 - 13568476
Alignment:
Q  605 tctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacgg 652  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacgg 13568476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 41527920 - 41528025
Alignment:
Q  21 tgatggtgtagaattatcaatattcatcgaattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatca-ttttaagttaaacaaatct 119  Q
    ||||| |||||||| |||||||  |||  |||||| ||||||||||   ||| ||| ||||||||||||| |||||| || ||||||||| || ||||||    
T  41527920 tgatgatgtagaatgatcaatacccatgtaattacatgaaaactcctctaaagttttaatttaaatatgacatatcaccatttttaagttcaa-aaatct 41528018  T
Q  120 gaaagag 126  Q
    |||||||    
T  41528019 gaaagag 41528025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 555 - 662
Target Start/End: Complemental strand, 10542496 - 10542389
Alignment:
Q  555 actcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 654  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10542496 actcttccaaaaactagcgtatgccgctaattgtaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 10542397  T
Q  655 ccgtgctt 662  Q
    ||||||||    
T  10542396 ccgtgctt 10542389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 532 - 662
Target Start/End: Original strand, 42202366 - 42202496
Alignment:
Q  532 ttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 631  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  42202366 ttgcagagccctccaaaaagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagtt 42202465  T
Q  632 cgctatgtgatcatcacacggctccgtgctt 662  Q
    |||||||| |||| |||||||||||||||||    
T  42202466 cgctatgtcatcaacacacggctccgtgctt 42202496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 532 - 662
Target Start/End: Original strand, 42211234 - 42211364
Alignment:
Q  532 ttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 631  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  42211234 ttgcagagccctccaaaaagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagtt 42211333  T
Q  632 cgctatgtgatcatcacacggctccgtgctt 662  Q
    |||||||| |||| |||||||||||||||||    
T  42211334 cgctatgtcatcaacacacggctccgtgctt 42211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 532 - 658
Target Start/End: Complemental strand, 45152120 - 45151994
Alignment:
Q  532 ttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 631  Q
    ||||||| |||||  |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||    
T  45152120 ttgcagagccctccgtaaagaggactcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaagaatagtt 45152021  T
Q  632 cgctatgtgatcatcacacggctccgt 658  Q
    |||||||| || |||||||||||||||    
T  45152020 cgctatgtcattatcacacggctccgt 45151994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 532 - 693
Target Start/End: Complemental strand, 42409724 - 42409564
Alignment:
Q  532 ttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 631  Q
    ||||||| ||||||| ||| ||||||||||||||||||| |||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  42409724 ttgcagagccctcaacaaaaaggactcttccaaaaactaacgtatgtcgttaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagtt 42409625  T
Q  632 cgctatgtgatcatcacacggctccgtgcttnnnnnnngtagagatcctttcattttatatg 693  Q
    |||||||| |||||||||| |||||||||||       ||||||||| ||||||||||||||    
T  42409624 cgctatgtcatcatcacacagctccgtgctt-ataccagtagagatcatttcattttatatg 42409564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 532 - 659
Target Start/End: Original strand, 45316388 - 45316515
Alignment:
Q  532 ttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 631  Q
    ||||||| |||||||| |||||| ||||||||||||||| ||||||||| |||  |||||| | ||||||||||||||||||||||||||||||||||||    
T  45316388 ttgcagagccctcaattaagagggctcttccaaaaactaacgtatgccgttaaaagtgacgttgacacggtattctttagtaaaaggcgaaagaatagtt 45316487  T
Q  632 cgctatgtgatcatcacacggctccgtg 659  Q
    |||||||| |||||||||||||||||||    
T  45316488 cgctatgtcatcatcacacggctccgtg 45316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 554 - 662
Target Start/End: Original strand, 2176315 - 2176423
Alignment:
Q  554 gactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggc 653  Q
    ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |    
T  2176315 gactcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacgtc 2176414  T
Q  654 tccgtgctt 662  Q
    |||||||||    
T  2176415 tccgtgctt 2176423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 532 - 659
Target Start/End: Original strand, 43014303 - 43014430
Alignment:
Q  532 ttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 631  Q
    ||||||| |||||||| |||||  ||||| |||||| || ||||||||| ||   ||||||| |||||||||||||||||||||||||||||||||||||    
T  43014303 ttgcagagccctcaatcaagagagctctttcaaaaattaacgtatgccgttataagtgacgcacacacggtattctttagtaaaaggcgaaagaatagtt 43014402  T
Q  632 cgctatgtgatcatcacacggctccgtg 659  Q
    ||||||||| ||||||||||||||||||    
T  43014403 cgctatgtgctcatcacacggctccgtg 43014430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 51795142 - 51795018
Alignment:
Q  534 gcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcg 633  Q
    ||||| ||||| | ||||| ||||||||||||||||||| |||||||| || ||||||| | | ||| |||||||||||||||||||||| ||||||| |    
T  51795142 gcagagccctccaaaaagatgactcttccaaaaactagcatatgccgcaaaatgtgacgttgatacgctattctttagtaaaaggcgaaacaatagtttg 51795043  T
Q  634 ctatgtgatcatcacacggctccgt 658  Q
    |||||| |||||||||||| |||||    
T  51795042 ctatgtcatcatcacacggttccgt 51795018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 569 - 708
Target Start/End: Original strand, 42217246 - 42217385
Alignment:
Q  569 tagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttnnnnnn 668  Q
    |||| ||||||||||| || ||| || |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||          
T  42217246 tagcatatgccgctaaatgcgaccctgacacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatgcttaatacc 42217345  T
Q  669 ngtagagatcctttcattttatatgaaagctgcatagttt 708  Q
     ||  |||||  ||||||||||||| |||| |||||||||    
T  42217346 tgtgcagatcagttcattttatatgcaagcagcatagttt 42217385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 600 - 660
Target Start/End: Complemental strand, 42417700 - 42417640
Alignment:
Q  600 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgc 660  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  42417700 ggtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacacagctccgtgc 42417640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 45919124 - 45919229
Alignment:
Q  21 tgatggtgtagaattatcaatattcatcgaattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatca-ttttaagttaaacaaatct 119  Q
    ||||| |||||||| |||||||  |||  |||||| |||||||||| | ||| ||| ||||||||||||| ||||||  | ||||||||| || ||||||    
T  45919124 tgatgatgtagaatgatcaatacccatgtaattacatgaaaactcctttaaagttttaatttaaatatgacatatcacaatttttaagttcaa-aaatct 45919222  T
Q  120 gaaagag 126  Q
    |||||||    
T  45919223 gaaagag 45919229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 49880964 - 49880859
Alignment:
Q  21 tgatggtgtagaattatcaatattcatcgaattacctgaaaactccctaaaaatttcaatttaaatatgatatatca-tcattttaagttaaacaaatct 119  Q
    ||||| |||||||| |||||||  |||  |||||| |||||||||| | ||| ||| ||||||||||||| |||||| |  ||||||||| || ||||||    
T  49880964 tgatgatgtagaatgatcaatacccatgtaattacatgaaaactcctttaaagttttaatttaaatatgacatatcactatttttaagttcaa-aaatct 49880866  T
Q  120 gaaagag 126  Q
    |||||||    
T  49880865 gaaagag 49880859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 7e-48; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 514 - 659
Target Start/End: Complemental strand, 3647171 - 3647026
Alignment:
Q  514 aaaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagta 613  Q
    ||||| |||| |||||  ||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  3647171 aaaaacattgcactaacattgcagagccctcaataaagaggaccctttcaaaaactagtgtatgccgctaatagtgacgctgacacggtattctttagta 3647072  T
Q  614 aaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 659  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||    
T  3647071 aaaggcgaaagaatagtttgctatgtcatcatcacacggctccgtg 3647026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 515 - 659
Target Start/End: Complemental strand, 3649619 - 3649475
Alignment:
Q  515 aaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 614  Q
    |||| ||||||||||  ||||||| |||||||| |||||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||||    
T  3649619 aaaaaattgaactaatattgcagagccctcaattaagaggacccttccaaaaactagcatatgccgataattgtgatgctaacacggtattctttagtaa 3649520  T
Q  615 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 659  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||    
T  3649519 aaggcgaaagaatagttcgctatgtcatcatcacacaactccgtg 3649475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 515 - 650
Target Start/End: Complemental strand, 3657736 - 3657601
Alignment:
Q  515 aaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 614  Q
    |||| ||||||||||  |||||||  |||| ||||||| ||  |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  3657736 aaaaaattgaactaatattgcagagtcctcgataaagatgatccttccaaaaactagtgtatgccgctatttgtgacgctgacacggtattctttagtaa 3657637  T
Q  615 aaggcgaaagaatagttcgctatgtgatcatcacac 650  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3657636 aaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 574 - 654
Target Start/End: Complemental strand, 3641291 - 3641211
Alignment:
Q  574 tatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 654  Q
    |||||| ||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3641291 tatgccactatttgtgacgctgatacagtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggct 3641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 587
Target Start/End: Complemental strand, 3656223 - 3656176
Alignment:
Q  540 ccctcaataaagaggactcttccaaaaactagcgtatgccgctaattg 587  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  3656223 ccctcaacaaagaggactcttccaaaaactagcgtatgcccctaattg 3656176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 11699145 - 11699227
Alignment:
Q  69 aaaaatttcaatttaaatatgatatatcatca-ttttaagttaaacaaatctgaaagagaaaccaaaactacgtgattttaaaa 151  Q
    ||||| |||||||||||||||||||||||| | ||||||||| || |||||||||| | ||||||||||||| | |||||||||    
T  11699145 aaaaaattcaatttaaatatgatatatcataatttttaagttcaa-aaatctgaaaaataaaccaaaactacataattttaaaa 11699227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 619
Target Start/End: Complemental strand, 3648270 - 3648192
Alignment:
Q  540 ccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggc 619  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||||||| ||| || |||| ||||| |||| ||||||||    
T  3648270 ccctcaacaaagaggacccttccaaaat-tagcgtatgccgctaattgcgacactgacacagtattgtttaataaaaggc 3648192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 642
Target Start/End: Original strand, 19523283 - 19523330
Alignment:
Q  595 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgat 642  Q
    ||||||| |||||||||||||||||||||||||  |||||| ||||||    
T  19523283 cacacggaattctttagtaaaaggcgaaagaattattcgctctgtgat 19523330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 40430308 - 40430390
Alignment:
Q  70 aaaatttcaatttaaatatgatatatcatcatttt-aagttaaacaaatctgaaagagaaaccaaaactacgtgattttaaaa 151  Q
    |||| |||||||||||||| ||||||||  ||||| |||||||| |||| ||||| || ||  ||||||| ||||||||||||    
T  40430308 aaaaattcaatttaaatataatatatcacaatttttaagttaaaaaaatatgaaaaaggaattaaaactatgtgattttaaaa 40430390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 7e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 515 - 659
Target Start/End: Complemental strand, 17889566 - 17889422
Alignment:
Q  515 aaaatattgaactaaatttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 614  Q
    |||||||| ||||||  |||||||||||||| ||| |||||||||| |||||| ||||||||||||||  | ||||||  ||||||||||||||||||||    
T  17889566 aaaatattaaactaatattgcagaaccctcattaaggaggactctttcaaaaattagcgtatgccgcttttagtgacgtgcacacggtattctttagtaa 17889467  T
Q  615 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 659  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  17889466 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 17889422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 549 - 662
Target Start/End: Complemental strand, 25698918 - 25698805
Alignment:
Q  549 aagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcac 648  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  25698918 aagaggattcttccaaaaactagcgtatgccgctaattatgacgctcacacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcac 25698819  T
Q  649 acggctccgtgctt 662  Q
    || |||||||||||    
T  25698818 acagctccgtgctt 25698805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 589 - 660
Target Start/End: Complemental strand, 36790905 - 36790834
Alignment:
Q  589 gacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgc 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | |||||||||    
T  36790905 gacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 36790834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 659
Target Start/End: Original strand, 49588157 - 49588258
Alignment:
Q  558 cttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccg 657  Q
    ||||||||||   |||||| ||||| |  ||||| | ||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||    
T  49588157 cttccaaaaatatgcgtataccgcttaaagtgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccg 49588256  T
Q  658 tg 659  Q
    ||    
T  49588257 tg 49588258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 563 - 651
Target Start/End: Original strand, 46362507 - 46362595
Alignment:
Q  563 aaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacg 651  Q
    |||||||| ||||| ||||||| ||||| ||| ||| ||||||||||||||||| |||||| ||||||||||||||| ||||| |||||    
T  46362507 aaaaactaacgtataccgctaaatgtgatgctgacatggtattctttagtaaaaagcgaaataatagttcgctatgtcatcattacacg 46362595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 605 - 644
Target Start/End: Complemental strand, 20918725 - 20918686
Alignment:
Q  605 tctttagtaaaaggcgaaagaatagttcgctatgtgatca 644  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtgatca 20918686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 6553721 - 6553616
Alignment:
Q  21 tgatggtgtagaattatcaatattcatcgaattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatca-ttttaagttaaacaaatct 119  Q
    ||||| |||||||| |||||||  |||  |||||| |||||||| | | ||||||| ||||||||||||| |||||| || ||||||||| || ||||||    
T  6553721 tgatgatgtagaatgatcaatacccatgtaattacatgaaaacttctttaaaattttaatttaaatatgacatatcaccatttttaagttcaa-aaatct 6553623  T
Q  120 gaaagag 126  Q
    |||||||    
T  6553622 gaaagag 6553616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 35695465 - 35695390
Alignment:
Q  50 aattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatcat-tttaagttaaacaaatctgaaaga 125  Q
    |||||||| ||||||||| |||| ||||||||||||||||| |||||| ||| || ||||| || ||||||||||||    
T  35695465 aattacctaaaaactcccgaaaagtttcaatttaaatatgacatatcaccatgttgaagttcaa-aaatctgaaaga 35695390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 37732818 - 37732901
Alignment:
Q  68 taaaaatttcaatttaaatatgatatatcatca-ttttaagttaaacaaatctgaaagagaaaccaaaactacgtgattttaaaa 151  Q
    |||||| ||| |||||||||| |||||||| || |||||||||  | |||| ||||||||||||||||||||||| || ||||||    
T  37732818 taaaaacttcgatttaaatataatatatcaccaattttaagttcga-aaatatgaaagagaaaccaaaactacgttatcttaaaa 37732901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 313504 - 313399
Alignment:
Q  21 tgatggtgtagaattatcaatattcatcgaattacctgaaaactccctaaaaatttcaatttaaatatgatatatca-tcattttaagttaaacaaatct 119  Q
    ||||| |||||||| |||||||  |||  |||||| |||||||||| | ||| ||| ||||||||||||| ||||||  | ||||||||| || ||||||    
T  313504 tgatgatgtagaataatcaatacccatgtaattacatgaaaactcctttaaagttttaatttaaatatgacatatcaccctttttaagttcaa-aaatct 313406  T
Q  120 gaaagag 126  Q
    |||||||    
T  313405 gaaagag 313399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 56210422 - 56210500
Alignment:
Q  29 tagaattatcaatattcatcgaattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatcattttaagtt 109  Q
    |||||| |||||||| |||  ||| |||| |||||||| |||||||||||||||||   ||||||||||| |||| |||||    
T  56210422 tagaatgatcaatatccataaaatcacctaaaaactccttaaaaatttcaatttaa--ttgatatatcattatttaaagtt 56210500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 543 - 698
Target Start/End: Complemental strand, 46446330 - 46446175
Alignment:
Q  543 tcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgat 642  Q
    ||||| |||| ||||||||||||||||||||||||||   ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  46446330 tcaattaagaagactcttccaaaaactagcgtatgccaaaaatagtaacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcat 46446231  T
Q  643 catcacacggctccgtgcttnnnnnnngtagagatcctttcattttatatgaaagc 698  Q
    ||||||| |||||| |||||       | |||| ||||||||||||||||| ||||    
T  46446230 catcacaaggctccatgcttaacaagagaagagttcctttcattttatatgcaagc 46446175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 552 - 659
Target Start/End: Original strand, 21884053 - 21884160
Alignment:
Q  552 aggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacg 651  Q
    ||||||||| |||||| || |||||||||||    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21884053 aggactctttcaaaaattaacgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacg 21884152  T
Q  652 gctccgtg 659  Q
    ||||||||    
T  21884153 gctccgtg 21884160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 35608621 - 35608661
Alignment:
Q  69 aaaaatttcaatttaaatatgatatatcatcattttaagtt 109  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  35608621 aaaaatttcaattgaaatatgatatatcaccattttaagtt 35608661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 654
Target Start/End: Original strand, 35717255 - 35717302
Alignment:
Q  607 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 654  Q
    ||||||||||| ||||| ||||||| |||||||| |||||||||||||    
T  35717255 tttagtaaaagacgaaataatagtttgctatgtgctcatcacacggct 35717302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 14044662 - 14044566
Alignment:
Q  50 aattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatcattttaagttaaacaaatctgaaagagaaaccaaaactacgtgatttt 147  Q
    |||||| ||||||||  ||| || |||| ||||||  |||| |||||| ||||||||||| || |||||| ||||||| || ||||||| ||||||||    
T  14044662 aattacttgaaaactttctataagtttcgatttaatcatgacatatcaccattttaagtttaa-aaatctaaaagagagactaaaactatgtgatttt 14044566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 50240630 - 50240554
Alignment:
Q  50 aattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatca-ttttaagttaaacaaatctgaaagag 126  Q
    |||||| |||||||||| | ||| ||| ||||||||||||| |||||| || ||||||||| || |||||||||||||    
T  50240630 aattacatgaaaactcctttaaagttttaatttaaatatgacatatcaccatttttaagttcaa-aaatctgaaagag 50240554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 532 - 650
Target Start/End: Complemental strand, 26568465 - 26568347
Alignment:
Q  532 ttgcagaaccctcaataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 631  Q
    ||||||| | ||||||||||||  ||||| |||||| ||||||||||||||    ||||||| ||||||||||||||||||||||||| |||||||||||    
T  26568465 ttgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcaaaagaatagtt 26568366  T
Q  632 cgctatgtgatcatcacac 650  Q
    ||||||||| |||||||||    
T  26568365 cgctatgtgctcatcacac 26568347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 659
Target Start/End: Complemental strand, 5900626 - 5900525
Alignment:
Q  558 cttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccg 657  Q
    ||||||||||  ||||||| ||||| |  ||||| | ||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||    
T  5900626 cttccaaaaataagcgtataccgcttaaagtgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccg 5900527  T
Q  658 tg 659  Q
    ||    
T  5900526 tg 5900525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 595 - 647
Target Start/End: Original strand, 43633443 - 43633495
Alignment:
Q  595 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatca 647  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||||||    
T  43633443 cacacggtattctttagtaaaaggcgaaagaatagttcactttgtgctcatca 43633495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 10399694 - 10399745
Alignment:
Q  50 aattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatcat 101  Q
    ||||||| ||||||| | |||||| |||||||||||||||||||||| ||||    
T  10399694 aattaccggaaaacttcttaaaaacttcaatttaaatatgatatatcttcat 10399745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 657
Target Start/End: Original strand, 2341338 - 2341391
Alignment:
Q  604 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccg 657  Q
    |||||| ||||||||||||||||||||||||| |||| |||  ||| |||||||    
T  2341338 ttcttttgtaaaaggcgaaagaatagttcgctttgtgctcactacatggctccg 2341391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 595 - 659
Target Start/End: Complemental strand, 33891656 - 33891592
Alignment:
Q  595 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 659  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||    
T  33891656 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgcttatcacacggttccgtg 33891592  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 3991451 - 3991405
Alignment:
Q  58 gaaaactccctaaaaatttcaatttaaatatgatatatcatcatttt 104  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  3991451 gaaaattccctaaaaatttcaattgaaatatgatatatcaccatttt 3991405  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 658
Target Start/End: Original strand, 27868671 - 27868725
Alignment:
Q  604 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgt 658  Q
    ||||| |||||||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  27868671 ttcttaagtaaaagacgaaacaatagtttgctatgtgatcattacacggctccgt 27868725  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 31736885 - 31736972
Alignment:
Q  50 aattacctgaaaactccctaaaaatttcaatttaaatatgatatatcatca-ttttaagttaaacaaatctgaaagagaaaccaaaact 137  Q
    ||||||||||||||||||| ||| | ||||| ||| ||||| |||||| || ||||||||| || |||||||||||||  |||||||||    
T  31736885 aattacctgaaaactcccttaaagtgtcaatctaagtatgacatatcaccatttttaagttcaa-aaatctgaaagagggaccaaaact 31736972  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 17427801 - 17427740
Alignment:
Q  75 ttcaatttaaatatgatatatcatc-attttaagttaaacaaatctgaaagagaaaccaaaac 136  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||| |||||||| |||| ||||    
T  17427801 ttcaatttaaatatgatatatcatcaatttttagttaaaaaaat-tgaaagaggaaccgaaac 17427740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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