View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707-Insertion-34 (Length: 656)

Name: NF1707-Insertion-34
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707-Insertion-34
NF1707-Insertion-34
[»] chr4 (10 HSPs)
chr4 (99-504)||(29420928-29421330)
chr4 (501-656)||(29457141-29457296)
chr4 (31-101)||(30199956-30200026)
chr4 (503-617)||(29418901-29419015)
chr4 (31-102)||(27365682-27365753)
chr4 (60-102)||(45112432-45112474)
chr4 (614-656)||(29421328-29421370)
chr4 (8-45)||(27365754-27365791)
chr4 (8-45)||(30200027-30200064)
chr4 (41-105)||(38282999-38283064)
[»] chr8 (5 HSPs)
chr8 (31-105)||(20267436-20267510)
chr8 (31-105)||(21054065-21054139)
chr8 (31-98)||(18167131-18167198)
chr8 (31-98)||(18630685-18630752)
chr8 (8-45)||(15363223-15363260)
[»] chr3 (4 HSPs)
chr3 (31-102)||(20321258-20321329)
chr3 (31-95)||(34152003-34152067)
chr3 (39-104)||(28983279-28983344)
chr3 (7-102)||(17653947-17654043)
[»] chr2 (1 HSPs)
chr2 (31-102)||(12336580-12336651)
[»] chr7 (2 HSPs)
chr7 (31-102)||(21867423-21867494)
chr7 (31-98)||(47024505-47024572)
[»] chr5 (1 HSPs)
chr5 (31-102)||(7955948-7956019)
[»] chr1 (5 HSPs)
chr1 (503-617)||(24337638-24337752)
chr1 (39-105)||(34917959-34918025)
chr1 (31-102)||(34025593-34025664)
chr1 (523-617)||(24412251-24412345)
chr1 (42-102)||(6812585-6812645)
[»] chr6 (1 HSPs)
chr6 (41-101)||(25013051-25013112)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 99 - 504
Target Start/End: Original strand, 29420928 - 29421330
Alignment:
Q  99 cccttagtctcgtattaactttacaaacctatattttcataccccaaagtcttacgcttcacctttcacacaaacatctatgagtaaatttgataaaagg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29420928 cccttagtctcgtattaactttacaaacctatattttcataccccaaagtcttacgcttcacctttcacacaaacatctatgagtaaatttgataaaagg 29421027  T
Q  199 ttaagattgaagtataaatcctatattaaaattccatggtataggtaagtgagtttttgcgtgaatggtttttcctttttcctaggcctgcgacttagta 298  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29421028 ttaagattgaagtataaatcctctattaaaattccatggtataggtaagtgagtttttgcgtgaatgctttttcctttttcctaggcctgcgacttagta 29421127  T
Q  299 agtgttttttaaaaatatttgacgtaaatacattggttttatggtacgtgaattcaatctacttaggaagtgtacatgattatttgaattgagatcttcg 398  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29421128 agtgttttttaaaaatatttcacgtatatacattggttttatggtacgtgaattcaatctacttaggaagtgtacatgattatttgaattgagatcttcg 29421227  T
Q  399 tatttcaatttaagttggcgctagtcaattgacacatgtcagacatgagacacgtctaataccaaaggcatccttgctcatgatgagagaacacctccaa 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||   ||||||||||||||||||    
T  29421228 tatttcaatttaagttggcgctagtcaattgacacatgtcagacatgagacacgcctaataccaaaggcgtccttgctc---atgagagaacacctccaa 29421324  T
Q  499 gcccct 504  Q
    ||||||    
T  29421325 gcccct 29421330  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 501 - 656
Target Start/End: Original strand, 29457141 - 29457296
Alignment:
Q  501 ccctaagaattcatatcgaagaattgtaatttagatctgatcatagatctataattcaaattcttaataaaagagaactcctaagataatgatattatct 600  Q
    ||||||||||||||||| | | ||||||||| | |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29457141 ccctaagaattcatatcaacggattgtaattcaaatctaatcatagatctataattcaaattcttaataaaagtgaactcctaagataatgatattatct 29457240  T
Q  601 acaacgaccaacaccttttatgcatttgttgaaacttgaatgatttgtgttgatgg 656  Q
    |||| |||||||||||||||||||||  |||||||||| ||  |||||| ||||||    
T  29457241 acaatgaccaacaccttttatgcattatttgaaacttggatcttttgtgctgatgg 29457296  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 30200026 - 30199956
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccc 101  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30200026 attccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacgccccc 30199956  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 503 - 617
Target Start/End: Original strand, 29418901 - 29419015
Alignment:
Q  503 ctaagaattcatatcgaagaattgtaatttagatctgatcatagatctataattcaaattcttaataaaagagaactcctaagataatgatattatctac 602  Q
    ||||||||| ||||| | ||||||||||| || |||  | ||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  29418901 ctaagaatttatatcaatgaattgtaattcagctctagttataaatctataattcaaattcctaataaaagataactcctaagataatgatataatctac 29419000  T
Q  603 aacgaccaacacctt 617  Q
    || | ||||||||||    
T  29419001 aatggccaacacctt 29419015  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 27365753 - 27365682
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccct 102  Q
    ||||| |||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  27365753 attccaaggaatatattcctggaaaagttattccagagaataatttttgcatccgtgaaacaaacgccccct 27365682  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 45112474 - 45112432
Alignment:
Q  60 attccaggaaataatttttgcatccgtgaaacaaacgccccct 102  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  45112474 attccagggaataatttttgcatccgtgaaacaaacgccccct 45112432  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 614 - 656
Target Start/End: Original strand, 29421328 - 29421370
Alignment:
Q  614 ccttttatgcatttgttgaaacttgaatgatttgtgttgatgg 656  Q
    ||||||||||||||||||||||||||||  |||||||||||||    
T  29421328 ccttttatgcatttgttgaaacttgaattttttgtgttgatgg 29421370  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 27365791 - 27365754
Alignment:
Q  8 gtaaccaaactcttttttaaaatattcctaggaatata 45  Q
    |||||||||| |||||||||||||||||||||||||||    
T  27365791 gtaaccaaacacttttttaaaatattcctaggaatata 27365754  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 30200064 - 30200027
Alignment:
Q  8 gtaaccaaactcttttttaaaatattcctaggaatata 45  Q
    |||||||||| |||||||||||||||||||||||||||    
T  30200064 gtaaccaaacacttttttaaaatattcctaggaatata 30200027  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 38282999 - 38283064
Alignment:
Q  41 atatattcctgggaaagtta-ttccaggaaataatttttgcatccgtgaaacaaacgcccccttag 105  Q
    |||| ||||||||||||||| ||||||| |  |||||||||||||| ||||||||| |||||||||    
T  38282999 atattttcctgggaaagttaattccagggagaaatttttgcatccgggaaacaaacacccccttag 38283064  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 20267436 - 20267510
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgcccccttag 105  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20267436 attccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacgcccccttag 20267510  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 21054065 - 21054139
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgcccccttag 105  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21054065 attccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacgcccccttag 21054139  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 18167131 - 18167198
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgcc 98  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||    
T  18167131 attccaaggaatatattcctgggaatgttattccagggaataatttttgtatccatgaaacaaacgcc 18167198  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 18630685 - 18630752
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgcc 98  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||    
T  18630685 attccaaggaatatattcctgggaatgttattccagggaataatttttgtatccatgaaacaaacgcc 18630752  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 15363223 - 15363260
Alignment:
Q  8 gtaaccaaactcttttttaaaatattcctaggaatata 45  Q
    |||||||||| |||||||||||||||||||||||||||    
T  15363223 gtaaccaaacacttttttaaaatattcctaggaatata 15363260  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 20321258 - 20321329
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccct 102  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  20321258 attccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacaccccct 20321329  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 34152003 - 34152067
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaac 95  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34152003 attccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaac 34152067  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 28983344 - 28983279
Alignment:
Q  39 gaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccctta 104  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  28983344 gaatatattcgtgggaaagttattccatgaaataatttttgcatccgtgaaacaaacgctccctta 28983279  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 17653947 - 17654043
Alignment:
Q  7 agtaaccaaactcttttttaaaatattccta-ggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccct 102  Q
    ||||||||||  |||||| |||||| | ||| ||||| |||||| |  ||| ||||||||  ||||||||||||||||||||||||||||| |||||    
T  17653947 agtaaccaaatactttttaaaaataattctaaggaatgtattccagaaaaaattattccaaaaaataatttttgcatccgtgaaacaaacgtcccct 17654043  T

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Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 12336580 - 12336651
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccct 102  Q
    ||||| || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  12336580 attccaagaaatatattcctgggaaaattattccagggaataatttttgcatccgtgaaacaaacgccccct 12336651  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 21867494 - 21867423
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccct 102  Q
    ||||| ||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||||||    
T  21867494 attccaaggaatatattcctgggaatgttattccagagaataatttttgtatccgtgaaacaaacgccccct 21867423  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 47024505 - 47024572
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgcc 98  Q
    ||||| |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  47024505 attccaaggaatatattcctgaaaaagttatttcaggaaataatttttgcatccgtgaaacaaacgcc 47024572  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 7955948 - 7956019
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccct 102  Q
    ||||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |||||    
T  7955948 attccaaggaatatattcctgggaaaattattccagggaataatttttgcatctgtgaaacaaacggcccct 7956019  T

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Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 503 - 617
Target Start/End: Original strand, 24337638 - 24337752
Alignment:
Q  503 ctaagaattcatatcgaagaattgtaatttagatctgatcatagatctataattcaaattcttaataaaagagaactcctaagataatgatattatctac 602  Q
    ||||||||| ||||| | | ||||||||| |||||||||  |||||||||||||||||||  |||| ||||| ||||| ||||||||| |||| ||||||    
T  24337638 ctaagaattaatatcaatggattgtaattcagatctgattgtagatctataattcaaattgctaattaaagataactcttaagataattatataatctac 24337737  T
Q  603 aacgaccaacacctt 617  Q
    || || |||||||||    
T  24337738 aatgagcaacacctt 24337752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 34917959 - 34918025
Alignment:
Q  39 gaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgcccccttag 105  Q
    |||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  34917959 gaatatattcctggaaaagttattccaaggaataatttttgcatccgtgaaacaaacgcctccttag 34918025  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 34025593 - 34025664
Alignment:
Q  31 attcctaggaatatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccct 102  Q
    ||||| ||||||||||||||||||| ||||||| ||  ||||||||||| ||||||||||||||||||||||    
T  34025593 attccaaggaatatattcctgggaatgttattctagagaataatttttgtatccgtgaaacaaacgccccct 34025664  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 523 - 617
Target Start/End: Original strand, 24412251 - 24412345
Alignment:
Q  523 attgtaatttagatctgatcatagatctataattcaaattcttaataaaagagaactcctaagataatgatattatctacaacgaccaacacctt 617  Q
    |||| |||| ||||||||| ||||||||||||||||||||  |||| ||||| ||||| || |||||| |||| |||||||| || |||||||||    
T  24412251 attgcaattgagatctgattatagatctataattcaaattgctaattaaagataactcttatgataattatataatctacaatgagcaacacctt 24412345  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 6812645 - 6812585
Alignment:
Q  42 tatattcctgggaaagttattccaggaaataatttttgcatccgtgaaacaaacgccccct 102  Q
    |||| |||||||||||||| ||| ||||||| ||||||  ||| | |||||||||||||||    
T  6812645 tataatcctgggaaagttaatcccggaaatattttttgattccataaaacaaacgccccct 6812585  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 25013051 - 25013112
Alignment:
Q  41 atatattcctgggaaagtta-ttccaggaaataatttttgcatccgtgaaacaaacgccccc 101  Q
    |||| ||||||||||||||| |||||||||  |||||||||||||| ||||||||| |||||    
T  25013051 atattttcctgggaaagttaattccaggaagaaatttttgcatccgggaaacaaacaccccc 25013112  T

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