View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1707-Insertion-4 (Length: 830)

Name: NF1707-Insertion-4
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1707-Insertion-4
NF1707-Insertion-4
[»] chr7 (5 HSPs)
chr7 (8-283)||(30077828-30078103)
chr7 (540-790)||(30078359-30078609)
chr7 (342-446)||(30078162-30078266)
chr7 (351-446)||(30070803-30070898)
chr7 (11-112)||(30084255-30084356)
[»] chr8 (2 HSPs)
chr8 (9-140)||(10810220-10810351)
chr8 (401-435)||(10810606-10810640)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 30077828 - 30078103
Alignment:
Q  8 tcgacaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30077828 tcgacaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaa 30077927  T
Q  108 tccttgtactcacacaaacaaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgctgaactgaaacctcggatacgaatttatcatgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30077928 tccttgtactcacacaaacaaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgctgaactgaaacctcggatacgaatttatcatgt 30078027  T
Q  208 tgtcttctagacccaccactgcgttttcttcatcgttttcagctatgaatatgtcagttcgtacaatgacaccctc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078028 tgtcttctagacccaccactgcgttttcttcatcgttttcagctatgaatatgtcagttcgtacaatgacaccctc 30078103  T

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Target: chr7; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 540 - 790
Target Start/End: Original strand, 30078359 - 30078609
Alignment:
Q  540 tgagggagaaacttaggggggttaggatggcannnnnnnnnnnaggggtaaagggtgggtgagagtttcatctgtagcatttaatactggatttttgtgg 639  Q
    ||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078359 tgagggagaaacttaggggggttaggatggcatttttttttttaggggtaaagggtgggtgagagtttcatctgtagcatttaatactggatttttgtgg 30078458  T
Q  640 agagattcaagtttcaaatctcaatgagggagttagtgtgcattaaattttgtggnnnnnnnnnnnnaagaatgagttggaattttgttttgttttcaac 739  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  30078459 agagattcaagtttcaaatctcaatgagggagttagtgtgcattaaattttgtgggagagagagagaaagaatgagttggaattttgttttgttttcaac 30078558  T
Q  740 ttttcccatcttgagtttgggtagggaatttagagtc-atacaggtagtcaa 790  Q
    ||| |||||||||||||| ||||| |||||||||||| ||||| ||||||||    
T  30078559 tttccccatcttgagttt-ggtagagaatttagagtcaatacaagtagtcaa 30078609  T

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Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 342 - 446
Target Start/End: Original strand, 30078162 - 30078266
Alignment:
Q  342 cggcaacaaaggtagaaagagaggatgagagtggcgaggaggacgagaaaagctagggttatggctatggagtagccaaggccaaggttggtgaagaaac 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078162 cggcaacaaaggtagaaagagaggatgagagtggcgaggaggacgagaaaagctagggttatggctatggagtagccaaggccaaggttggtgaagaaac 30078261  T
Q  442 tatgt 446  Q
    |||||    
T  30078262 tatgt 30078266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 351 - 446
Target Start/End: Original strand, 30070803 - 30070898
Alignment:
Q  351 aggtagaaagagaggatgagagtggcgaggaggacgagaaaagctagggttatggctatggagtagccaaggccaaggttggtgaagaaactatgt 446  Q
    ||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30070803 aggtagaaagaaaggaagagagtggcaagaaggacgagaaaagctagggttatggctgtggagtagccaaggccaaggttggtgaagaaactatgt 30070898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 30084255 - 30084356
Alignment:
Q  11 acaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatcc 110  Q
    |||||| ||||| || ||||||| ||||||||||| ||||| ||||  | ||||||| || ||  ||||||  |||||||||||||  |||||||| |||    
T  30084255 acaaactggacacgaaccattaaccttcaaccatgtatcaacacaatctcgatgaaaatagtggtgacattgcggcatcatcctcaaaatctccgattcc 30084354  T
Q  111 tt 112  Q
    ||    
T  30084355 tt 30084356  T

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Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 10810220 - 10810351
Alignment:
Q  9 cgacaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaat 108  Q
    ||||||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||| || || | |||||| ||||||||||| | |||||||||||    
T  10810220 cgacaaacgggacaagaaccgttaagtttcaaccacgaatcaagacaacataggtgaaaatagtgtctacattccggcatcatccttaacatctccgaat 10810319  T
Q  109 ccttgtactcacacaaacaaatggaacacgtg 140  Q
    ||||||||||||||||||| || |||||||||    
T  10810320 ccttgtactcacacaaacagatcgaacacgtg 10810351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 401 - 435
Target Start/End: Original strand, 10810606 - 10810640
Alignment:
Q  401 tatggctatggagtagccaaggccaaggttggtga 435  Q
    |||||||||||||||||||| ||||||||||||||    
T  10810606 tatggctatggagtagccaaagccaaggttggtga 10810640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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