View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707-Insertion-5 (Length: 866)
Name: NF1707-Insertion-5
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 570 - 747
Target Start/End: Original strand, 25803981 - 25804158
Alignment:
| Q |
570 |
gcttaatggattagattcacaccaaacagcgtttgttttctcaatcataggaacaaacaataaaagactatggctggagagatgctctttcaccttacaa |
669 |
Q |
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| T |
25803981 |
gcttaatggattagattcacaccaaacagcgtttgttttctcaatcataggaacaaacaataaaagactatggctggagagatgctctttcaccttacaa |
25804080 |
T |
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| Q |
670 |
gagataagatgggcaataaaaattaaaagataaactaagataac-acaactacaataataataattgttgaaaaagtag |
747 |
Q |
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| T |
25804081 |
gagataagat-ggcaataaaaattaaaagataaactaagataacaacaacaacaataataataattgttgaaaaagtag |
25804158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 731 - 866
Target Start/End: Original strand, 25804171 - 25804306
Alignment:
| Q |
731 |
aattgttgaaaaagtagcagcaactactagtttcctaaactaaaatgtaccagatactaataattagtaca-tatatggtaataaattaaactaggttta |
829 |
Q |
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| T |
25804171 |
aattgttgaaaaagtagcagcaactactagtt-cctaaactaaaatgtactagatactaataattagtacaatatatggtaataaattaaactaggttta |
25804269 |
T |
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| Q |
830 |
actcaagtcttctttttcttaatcttcttgttcccca |
866 |
Q |
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| T |
25804270 |
actcaagtcttctttttcttaatcttcttgttcccca |
25804306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 48659276 - 48659161
Alignment:
| Q |
44 |
gtactttatgtttcattcttgtgcaagtctttcatgagctttctgatccaaatagcttggttcacagccgcagcagagcagttacatattctgcctctgc |
143 |
Q |
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| T |
48659276 |
gtactttctgtttgaatcatgtgcaagtctgtcatgagctttctgatccaaatagcttggttcaccgcagcagc--aacagcgatatattctgcctctgc |
48659179 |
T |
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| Q |
144 |
tgttgactgagcgataac |
161 |
Q |
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| T |
48659178 |
cgttgattgagctataac |
48659161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 43698621 - 43698727
Alignment:
| Q |
160 |
acctcaaattgggatgaagtttcaagggaggttgaagacttgagagacttgaaggcattttggttgaaccaagaa---gattcaaggttcaattttgtgg |
256 |
Q |
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| T |
43698621 |
acctcaaattaggatgaagtttcaagggagtttgaagacttgacagatttggaggc-ttttggttgaatcaagaagacgattcaaagttcaatgctgtgg |
43698719 |
T |
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| Q |
257 |
aaaacaaa |
264 |
Q |
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| T |
43698720 |
aaaacaaa |
43698727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 9310029 - 9309914
Alignment:
| Q |
44 |
gtactttatgtttcattcttgtgcaagtctttcatgagctttctgatccaaatagcttggttcacagccgcagcagagcagttacatattctgcctctgc |
143 |
Q |
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| T |
9310029 |
gtactttctgtttgaatcatgtgcaagtctgtcatgagctttctgatccaaatagcttggttcaccgcagcagc--aacagcgatatattctgcctctgc |
9309932 |
T |
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| Q |
144 |
tgttgactgagcgataac |
161 |
Q |
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| T |
9309931 |
cgttgattgagctataac |
9309914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 31084806 - 31084732
Alignment:
| Q |
44 |
gtactttatgtttcattcttgtgcaagtctttcatgagctttctgatccaaatagcttggttcacagccgcagca |
118 |
Q |
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| T |
31084806 |
gtactttctgtttgaatcatgtgcaagtctgtcatgagctttctgatccaaatagcttggttcaccgcagcagca |
31084732 |
T |
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