View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707-Insertion-6 (Length: 740)
Name: NF1707-Insertion-6
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707-Insertion-6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 49165031 - 49164566
Alignment:
| Q |
8 |
ccaatttcaaattattgtcagatacaaatgttttccatccgttactcatttttctcagacaatatttaacaatccatgttctctcatcatccaagacctg |
107 |
Q |
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| T |
49165031 |
ccaatttcaaattattgtcagatacaaatgttttccatccgttactcatttttctcagacaatatttaacaatccatgttctctcatcatccaagacctg |
49164932 |
T |
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| Q |
108 |
aagggtgatttcgctttgctgttccttcaaatacttttgttcaaaatttaaagggacttgctggattttcattttgtaacaaagttagaaaatgtagtaa |
207 |
Q |
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| T |
49164931 |
aagggcgatttcgctttgctgttccttcaaatacttttgttcaaaatttaaagggacatgctggattttcattttgtaacaaagttagaaaatgtagtaa |
49164832 |
T |
|
| Q |
208 |
ctaattaagatgtagattagcttnnnnnnngataataaacaatcttaacataaaaaattgaggctgttcaaagactcaccatgtattgattaacataaga |
307 |
Q |
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| T |
49164831 |
ctaattaagatgtagattagcttaaaaaaagataataaacaatcttaacataaaaaattgaggctgttcaaagactcaccatgtattgattaacataaga |
49164732 |
T |
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| Q |
308 |
atatgtcatgatagcagtgaaaaagggattgttagattcatagttttttgctttgtttaaagcttcaacaattttagcagttgaattcctctgctcttga |
407 |
Q |
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| T |
49164731 |
atatgtcatgatagcagtgaaaaagggattgttagattcatagttttttgctttgtttaaagcttcaacaattttagcagttgaattcctctgctcttga |
49164632 |
T |
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| Q |
408 |
ccatgcttcacattcaggcatttagtggt------attctcttctgagaaattgaatatggtatgt |
467 |
Q |
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| T |
49164631 |
ccatgcttcacattcaggcatttagtggtagaatcaatctcttctgagaaattgaatatggtatgt |
49164566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 519 - 740
Target Start/End: Complemental strand, 49164514 - 49164293
Alignment:
| Q |
519 |
tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
618 |
Q |
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| T |
49164514 |
tagagattaatccaaccatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
49164415 |
T |
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| Q |
619 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctct |
718 |
Q |
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| T |
49164414 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctct |
49164315 |
T |
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| Q |
719 |
gttcatgttgattattaccatc |
740 |
Q |
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| T |
49164314 |
gttcatgttgattattaccatc |
49164293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 589 - 643
Target Start/End: Complemental strand, 12874131 - 12874077
Alignment:
| Q |
589 |
gagcttgttccaacatcttcacttgcgtcaattctcaatttcttaagtggttgag |
643 |
Q |
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| T |
12874131 |
gagcttgttccaacaccttcacttgagtcacttctcaatttcttatgtggttgag |
12874077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 5e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 519 - 740
Target Start/End: Complemental strand, 43750980 - 43750759
Alignment:
| Q |
519 |
tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
618 |
Q |
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| T |
43750980 |
tagagattaatccaatcaagaattttttatacctttaacttggacaagtttaggattttttttcaatttggagcttgttccaacgtctttgcttgcgcca |
43750881 |
T |
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| Q |
619 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctct |
718 |
Q |
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| T |
43750880 |
attctcgatttcttatgtggttgaagacttgaaatttgtgattttggtctagtcttcttgcatgtaggtttttcatccaaattttcaacgaggttgttct |
43750781 |
T |
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| Q |
719 |
gttcatgttgattattaccatc |
740 |
Q |
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| T |
43750780 |
gctcatgttgattatttccatc |
43750759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 257 - 438
Target Start/End: Complemental strand, 43751245 - 43751067
Alignment:
| Q |
257 |
ataaaaaattgaggctgttcaaagactcaccatgtattgattaacataagaatatgtcatgatagcagtgaaaaagggattgttagattcatagtttttt |
356 |
Q |
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| T |
43751245 |
ataaaaaaatgaagctattgaaagactcaccatgtatttattagcataggaatatgtcatgacaacagtgaaaaagggattgttagttttgtaatttttt |
43751146 |
T |
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| Q |
357 |
gctttgtttaaagcttcaacaattttagcagttgaattcctctgctcttgaccatgcttcacattcaggcatttagtggtat |
438 |
Q |
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| T |
43751145 |
gctttgtttaaagcttcagcaatttttgaagttgaattcttcggctcttgatca---ttcacattaaggcattcagtggtat |
43751067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 43751410 - 43751329
Alignment:
| Q |
73 |
ttaacaatccatgttctctcatcatccaagacctgaagggtgatttcgctttgctgttccttcaaatacttttgttcaaaat |
154 |
Q |
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| T |
43751410 |
ttaacattccaagttctcccattatccaagacttgaaggacgataacgctttgtttttccttcatatacttttgttcaaaat |
43751329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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