View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1707-Insertion-8 (Length: 684)
Name: NF1707-Insertion-8
Description: NF1707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1707-Insertion-8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 238 - 684
Target Start/End: Original strand, 11812499 - 11812945
Alignment:
| Q |
238 |
tatatatatcaacaacttatattataacctttcaagcctttcaaaacaaccgtttatgtattaaacatgacaaatatttatatgaaaatggttttttraa |
337 |
Q |
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| T |
11812499 |
tatatatatcaacaacttatattgtaacctttgaagcctttcaaaacaaccgtttatgtattaaacatgacaaatatttatatgaaaatggttttttgaa |
11812598 |
T |
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| Q |
338 |
ttaaaaattgactcaaacaaattttccgataccagtttccatgcaatagaacaactacacaacttttgacttcaggatcaaggtactcaccataacctta |
437 |
Q |
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| T |
11812599 |
ttaaaaattgactcaaacaaattttccgataccagtttccatgcaatagaacaactacacaacttttgacttcaggatcaaggtactcaccataacctta |
11812698 |
T |
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| Q |
438 |
ttataattttaatttatgttagttttgcttaatgatcatctatgtatgtgattctgaccttatgactgatgatgttatctgaatttaggctacaccccaa |
537 |
Q |
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| T |
11812699 |
ttataattttaatttatgttagttttgcttaatgatcatctatgcatgtgattctgaccttatgactgatgatgttatctgaatttaggctacaccccaa |
11812798 |
T |
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| Q |
538 |
tttgctatttccacctcactctaacaattatcatatgatcaagtataatttttagttttgatcaatggtttctgtccawttttgattawtttttcagtct |
637 |
Q |
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| T |
11812799 |
tttgctatttccacctcactctaacaattatcatatgatcaattataatttttagttttgatcaatggtttatgtccaattttgattatttttgcagtct |
11812898 |
T |
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| Q |
638 |
tctgtagtgggccatgagtgaattatcatttttgtcaaaggtttaaa |
684 |
Q |
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| T |
11812899 |
tctgtagtgggccatgagtgaattatcatttttgtcaaaggtttaaa |
11812945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 11812343 - 11812440
Alignment:
| Q |
102 |
aaccaaagacaaaaatttaacaatttacannnnnnnnccgtatgataccaactctatgaattgaaccgcatgaaaaattgaaataactattatttgtc |
199 |
Q |
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| T |
11812343 |
aaccaaagacaaaaattaaacaatttacattttctttccgtatgataccaactctatgaattgaaccgcataaaaaattgaaataactattatttgtc |
11812440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 11812303 - 11812345
Alignment:
| Q |
8 |
actttaccaacatcttcactcataaacattttagagattgaac |
50 |
Q |
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| T |
11812303 |
actttaccaacatcttcactcataaacattttagagattgaac |
11812345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 26478739 - 26478703
Alignment:
| Q |
53 |
tccattgatagtgatcataagaaaaatctttaacttt |
89 |
Q |
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| T |
26478739 |
tccattgatagtaatcataagaaaaatcattaacttt |
26478703 |
T |
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