View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17070_high_15 (Length: 315)

Name: NF17070_high_15
Description: NF17070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17070_high_15
NF17070_high_15
[»] chr2 (1 HSPs)
chr2 (22-315)||(8187913-8188206)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 315
Target Start/End: Complemental strand, 8188206 - 8187913
Alignment:
Q  22 catcatcagtatctatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcatt 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8188206 catcctcagtatctatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcatt 8188107  T
Q  122 cttcttctccttatcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactacagatttgc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8188106 cttcttctccttatcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactacagatttgc 8188007  T
Q  222 tcattatccgttatcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagtactcaaacttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8188006 tcattatccgttatcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagaactcaaacttg 8187913  T

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