View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17070_high_1_N (Length: 624)

Name: NF17070_high_1_N
Description: NF17070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17070_high_1_N
NF17070_high_1_N
[»] chr3 (3 HSPs)
chr3 (24-580)||(26452896-26453464)
chr3 (523-605)||(26452805-26452887)
chr3 (528-601)||(32609383-32609456)
[»] chr4 (13 HSPs)
chr4 (357-500)||(23676325-23676469)
chr4 (502-604)||(21538912-21539014)
chr4 (502-601)||(4873037-4873136)
chr4 (518-585)||(5979786-5979853)
chr4 (518-594)||(3703584-3703660)
chr4 (518-601)||(25812263-25812339)
chr4 (517-559)||(12329026-12329068)
chr4 (512-558)||(21538844-21538890)
chr4 (507-544)||(2605367-2605404)
chr4 (537-582)||(48292387-48292432)
chr4 (517-558)||(53860895-53860936)
chr4 (570-598)||(24680790-24680818)
chr4 (561-609)||(32430543-32430591)
[»] scaffold0110 (2 HSPs)
scaffold0110 (502-601)||(11425-11524)
scaffold0110 (502-601)||(19162-19261)
[»] chr8 (5 HSPs)
chr8 (502-601)||(25939281-25939380)
chr8 (570-609)||(34676985-34677024)
chr8 (511-559)||(9040955-9041003)
chr8 (569-609)||(28798979-28799019)
chr8 (502-602)||(33432049-33432151)
[»] chr5 (18 HSPs)
chr5 (502-609)||(14613533-14613640)
chr5 (518-602)||(6706273-6706357)
chr5 (507-559)||(10818875-10818927)
chr5 (502-561)||(10818787-10818845)
chr5 (502-601)||(35924645-35924743)
chr5 (521-566)||(4639521-4639566)
chr5 (570-606)||(14123047-14123083)
chr5 (546-609)||(5506879-5506942)
chr5 (502-585)||(28976687-28976770)
chr5 (570-604)||(30511846-30511880)
chr5 (570-604)||(30552186-30552220)
chr5 (505-558)||(4192001-4192054)
chr5 (564-601)||(30513855-30513892)
chr5 (564-601)||(30554195-30554232)
chr5 (507-559)||(8367019-8367071)
chr5 (235-263)||(11727230-11727258)
chr5 (570-606)||(12075931-12075967)
chr5 (518-558)||(35924595-35924635)
[»] chr1 (10 HSPs)
chr1 (197-254)||(47680531-47680588)
chr1 (502-609)||(30018564-30018670)
chr1 (501-601)||(49632894-49632995)
chr1 (524-558)||(11985458-11985492)
chr1 (502-605)||(39065299-39065401)
chr1 (85-167)||(47680406-47680488)
chr1 (507-559)||(30018687-30018740)
chr1 (518-601)||(8258910-8258991)
chr1 (502-582)||(36724171-36724251)
chr1 (570-606)||(42486436-42486472)
[»] chr7 (7 HSPs)
chr7 (523-603)||(27866672-27866752)
chr7 (518-601)||(48073016-48073099)
chr7 (570-614)||(5617900-5617944)
chr7 (570-602)||(21311760-21311792)
chr7 (507-551)||(36390712-36390756)
chr7 (528-580)||(27747373-27747425)
chr7 (523-555)||(39933632-39933664)
[»] chr6 (11 HSPs)
chr6 (524-601)||(30351451-30351528)
chr6 (502-596)||(3806174-3806267)
chr6 (511-558)||(13613749-13613796)
chr6 (518-585)||(16396652-16396719)
chr6 (562-601)||(26221247-26221286)
chr6 (537-601)||(18142429-18142493)
chr6 (555-601)||(12120174-12120220)
chr6 (561-603)||(16185328-16185370)
chr6 (569-609)||(13613814-13613854)
chr6 (537-601)||(22997001-22997065)
chr6 (537-601)||(23791336-23791400)
[»] chr2 (6 HSPs)
chr2 (505-601)||(37629609-37629704)
chr2 (507-589)||(13793669-13793751)
chr2 (511-559)||(37096596-37096644)
chr2 (523-593)||(39994519-39994590)
chr2 (569-609)||(4984009-4984049)
chr2 (561-601)||(13798841-13798881)
[»] scaffold0197 (1 HSPs)
scaffold0197 (570-602)||(26024-26056)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 24 - 580
Target Start/End: Complemental strand, 26453464 - 26452896
Alignment:
Q  24 cctgtggagaaaaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagtgagagaagaggtatatt 123  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26453464 cctgtggagaacaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagagagagaagaggtatatt 26453365  T
Q  124 ggaaaatgagagaagaaatatgaggagcctacataaagtaaaat------------gagttctagcattggagnnnnnnnttcagtggttgttaaatcct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||       ||||||||||||||||||||    
T  26453364 ggaaaatgagagaagaaatatgaggagcctacataaagtaaaataggaagtgtgttgagttctagcattggagaaaaaaattcagtggttgttaaatcct 26453265  T
Q  212 acatggcatacttggacccacaatttagcagctaagaacaaaaaatttgttccagtgctttagaagctctaagattgatcggcacacccctttccattgc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  26453264 acatggcatacttggacccacaatttagcagctaagaacaaaatatttgttccagtgctttagaagctccaagattgatcggcacacccctttccattgt 26453165  T
Q  312 tcagcctatcagatcgtaacttctgctaaacaannnnnnnnctttaaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaat 411  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453164 tcagcctatcagatcgtaacttctgctaaacaattttttttctttaaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaat 26453065  T
Q  412 tttaacaattcacagggtccgtgagcatttacccttaagtcagtgatgggagacaacagcacacaaagcccagtaggacaaaaataaagcgagaattgct 511  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26453064 tttaacaattcacggggtccgtgagcatttacccttaagtcagtgatgggagacaacagcacacaaagcccagtaggacaaaaataaagcgagaattgtt 26452965  T
Q  512 ttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 580  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  26452964 ttttggacatccattatttcctagaaacacatgaaaatgaccaaaaatactccagcaatagttaactac 26452896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 523 - 605
Target Start/End: Original strand, 26452805 - 26452887
Alignment:
Q  523 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaatcgg 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452805 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaatcgg 26452887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 601
Target Start/End: Original strand, 32609383 - 32609456
Alignment:
Q  528 ttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||||||||||||||| |||| | |||||||||  |||  ||| |||| |||||||| |||||||||||||||    
T  32609383 ttttctagaaacacatggaaataatcaaaaacacttcagtgataattaattaccgctgacttataactagaaaa 32609456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 357 - 500
Target Start/End: Original strand, 23676325 - 23676469
Alignment:
Q  357 aaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaattttaa-caattcacagggtccgtgagcatttacccttaagtcagt 455  Q
    |||| ||||| | ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||| | ||||||||    
T  23676325 aaaggtggactaaattctaggattcaatgcttgtttttctcactccatgtgaaattttaagcaattcaaggggtccgtgagcatttaccgtcaagtcagt 23676424  T
Q  456 gatgggagacaacagcacacaaagcccagtaggacaaaaataaag 500  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||    
T  23676425 gatgggagacaccagcacagaaatcccagtaggacaaaaataaag 23676469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 21539014 - 21538912
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||||||||||||  || |||| ||||| ||||||||||| | ||||||||||||||||||||    ||||||| |||||||||||||||| |||||||    
T  21539014 gagaattgctttttaaactttcaatgtttcctagaaacacaaggaaatgaccaaaaacaccccaatggtagttaattaccgctggcttataattagaaaa 21538915  T
Q  602 tcg 604  Q
    |||    
T  21538914 tcg 21538912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 502 - 601
Target Start/End: Original strand, 4873037 - 4873136
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||||| |||||| ||| | |||| ||||||| ||||||||| |||||| |||||||||  ||||  |||||||||||||||| |||||||||||||||    
T  4873037 gagaatttcttttttgacttccattattttctaaaaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttataactagaaaa 4873136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 585
Target Start/End: Complemental strand, 5979853 - 5979786
Alignment:
Q  518 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 585  Q
    |||||||||||||  |||||||| ||| |||||||||||||||||||| |  ||||||||||||||||    
T  5979853 acattcattgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaactaccgctg 5979786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 594
Target Start/End: Original strand, 3703584 - 3703660
Alignment:
Q  518 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataac 594  Q
    |||| ||||||||| ||||||||||||||||||||||||||  |  ||||  ||||||||||||| || ||||||||    
T  3703584 acatccattgttttttagaaacacatgaaaatgaccaaaaaatcatcagcggtagttaactaccgttgacttataac 3703660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 518 - 601
Target Start/End: Original strand, 25812263 - 25812339
Alignment:
Q  518 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||| |||||||||||||||||||||| |||||| ||||||||         ||||||||||||||||| ||||||||||||||    
T  25812263 acatccattgttttctagaaacacatggaaatgatcaaaaaca-------tgtagttaactaccgctggtttataactagaaaa 25812339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 517 - 559
Target Start/End: Complemental strand, 12329068 - 12329026
Alignment:
Q  517 gacattcattgttttctagaaacacatgaaaatgaccaaaaac 559  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||    
T  12329068 gacatccattgttttttagaaacacatgaaaatgatcaaaaac 12329026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 512 - 558
Target Start/End: Original strand, 21538844 - 21538890
Alignment:
Q  512 ttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 558  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||    
T  21538844 tttttgacatccattgttttctagaaacacatggaaataaccaaaaa 21538890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Original strand, 2605367 - 2605404
Alignment:
Q  507 ttgctttttggacattcattgttttctagaaacacatg 544  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  2605367 ttgcttttttgacattcattgtttcctagaaacacatg 2605404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 582
Target Start/End: Complemental strand, 48292432 - 48292387
Alignment:
Q  537 aacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 582  Q
    |||||||| |||||||||||||||| |||||  |||||||||||||    
T  48292432 aacacatgtaaatgaccaaaaacactccagcggtagttaactaccg 48292387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 53860936 - 53860895
Alignment:
Q  517 gacattcattgttttctagaaacacatgaaaatgaccaaaaa 558  Q
    ||||| |||||||| ||||||||||||| |||||||||||||    
T  53860936 gacatccattgtttcctagaaacacatggaaatgaccaaaaa 53860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 598
Target Start/End: Original strand, 24680790 - 24680818
Alignment:
Q  570 tagttaactaccgctggcttataactaga 598  Q
    |||||||||||||||||||||||||||||    
T  24680790 tagttaactaccgctggcttataactaga 24680818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 32430543 - 32430591
Alignment:
Q  561 ccccagcaatagttaactaccgctggcttataactagaaaatcggcggt 609  Q
    |||||||  |||||||||||| | | |||||||||||||||||||||||    
T  32430543 ccccagcggtagttaactaccacagacttataactagaaaatcggcggt 32430591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 601
Target Start/End: Original strand, 11425 - 11524
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  ||||||||||| || | |||||||||||||||    
T  11425 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactactgccgacttataactagaaaa 11524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 601
Target Start/End: Original strand, 19162 - 19261
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  ||||||||||| || | |||||||||||||||    
T  19162 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactactgccgacttataactagaaaa 19261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 601
Target Start/End: Original strand, 25939281 - 25939380
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||||| |||||| | ||||||||||| ||||||||| ||| ||| |||||||||||| | |||  ||||||||||||||||||||||||||| ||||    
T  25939281 gagaattgttttttgaatattcattgtttcctagaaacatatggaaaagaccaaaaacacacaagcggtagttaactaccgctggcttataactataaaa 25939380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 570 - 609
Target Start/End: Original strand, 34676985 - 34677024
Alignment:
Q  570 tagttaactaccgctggcttataactagaaaatcggcggt 609  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  34676985 tagttaactaccgttggcttataactagaaaatcggcggt 34677024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 559
Target Start/End: Complemental strand, 9041003 - 9040955
Alignment:
Q  511 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 559  Q
    ||||| |||||||||||||| ||||||||||||| ||||||| ||||||    
T  9041003 ttttttgacattcattgtttcctagaaacacatggaaatgactaaaaac 9040955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 609
Target Start/End: Complemental strand, 28799019 - 28798979
Alignment:
Q  569 atagttaactaccgctggcttataactagaaaatcggcggt 609  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  28799019 atagttaactaccgctgacttataactagaaaaccggcggt 28798979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 602
Target Start/End: Original strand, 33432049 - 33432151
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatg---accaaaaacaccccagcaatagttaactaccgctggcttataactaga 598  Q
    |||||||| |||||| ||||  ||||||||||||||| |||||||||||   |  ||||||||| ||||| || |||||| || ||  ||||||||||||    
T  33432049 gagaattgttttttg-acatctattgttttctagaaatacatgaaaatgataaaaaaaaacacctcagcagtaattaactgccacttacttataactaga 33432147  T
Q  599 aaat 602  Q
    ||||    
T  33432148 aaat 33432151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 609
Target Start/End: Original strand, 14613533 - 14613640
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||||||||||    ||| |||||||| |||||||||||||||||| ||||||||||| ||| |  |||||| | || ||||||||||||||||||||    
T  14613533 gagaattgcttttctcgcatccattgtttcctagaaacacatgaaaataaccaaaaacactccaacggtagttagccactgctggcttataactagaaaa 14613632  T
Q  602 tcggcggt 609  Q
    ||||||||    
T  14613633 tcggcggt 14613640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 602
Target Start/End: Original strand, 6706273 - 6706357
Alignment:
Q  518 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaat 602  Q
    |||||||||||||  || |||||||||||||| ||||||||||   ||||  ||||||||||||| || |||||||||| |||||    
T  6706273 acattcattgtttcttataaacacatgaaaataaccaaaaacatttcagcggtagttaactaccgttgacttataactaaaaaat 6706357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 10818927 - 10818875
Alignment:
Q  507 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 559  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  10818927 ttgcttttttgacatccattgttttctaaaaacacatggaaatgaccaaaaac 10818875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 561
Target Start/End: Original strand, 10818787 - 10818845
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacac 561  Q
    ||||||||||||||  |||| ||||||||||||||||||||| ||||| |||||||||||    
T  10818787 gagaattgcttttttaacat-cattgttttctagaaacacattaaaattaccaaaaacac 10818845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 601
Target Start/End: Complemental strand, 35924743 - 35924645
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||||||||||   |||| |||||||| ||||||||| ||| |||| |||||| ||| || ||| |||||||||||||  || |||||||||||||||    
T  35924743 gagaattgcttttctcacatccattgtttcctagaaacatatggaaataaccaaacacatcc-agcgatagttaactaccattgacttataactagaaaa 35924645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 521 - 566
Target Start/End: Complemental strand, 4639566 - 4639521
Alignment:
Q  521 ttcattgttttctagaaacacatgaaaatgaccaaaaacaccccag 566  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||    
T  4639566 ttcattgtttcttagaaacacatgaaaatgatcaaaaacaccccag 4639521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 606
Target Start/End: Original strand, 14123047 - 14123083
Alignment:
Q  570 tagttaactaccgctggcttataactagaaaatcggc 606  Q
    |||||||||||||||||||||||||||||||| ||||    
T  14123047 tagttaactaccgctggcttataactagaaaaccggc 14123083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 609
Target Start/End: Original strand, 5506879 - 5506942
Alignment:
Q  546 aaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaatcggcggt 609  Q
    |||| |||||||||| | ||||  ||||||||| |  |||||||||||||||||||||||||||    
T  5506879 aaataaccaaaaacatctcagcggtagttaactgcgactggcttataactagaaaatcggcggt 5506942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 585
Target Start/End: Complemental strand, 28976770 - 28976687
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 585  Q
    |||||||||||||   |||| ||||||||  |||||| |||||||||||| ||||||||  | | | |||||||||||||||||    
T  28976770 gagaattgcttttctcacatccattgtttcttagaaatacatgaaaatgatcaaaaacattcaaacgatagttaactaccgctg 28976687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 604
Target Start/End: Complemental strand, 30511880 - 30511846
Alignment:
Q  570 tagttaactaccgctggcttataactagaaaatcg 604  Q
    ||||||||||| |||||||||||||||||||||||    
T  30511880 tagttaactactgctggcttataactagaaaatcg 30511846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 604
Target Start/End: Complemental strand, 30552220 - 30552186
Alignment:
Q  570 tagttaactaccgctggcttataactagaaaatcg 604  Q
    ||||||||||| |||||||||||||||||||||||    
T  30552220 tagttaactactgctggcttataactagaaaatcg 30552186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 558
Target Start/End: Complemental strand, 4192054 - 4192001
Alignment:
Q  505 aattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 558  Q
    ||||||| |||  |||| |||||||| ||| |||||||||||||||||||||||    
T  4192054 aattgctgtttacacatccattgtttcctacaaacacatgaaaatgaccaaaaa 4192001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 601
Target Start/End: Original strand, 30513855 - 30513892
Alignment:
Q  564 cagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  30513855 cagcagtagttaactaccgctgacttataactagaaaa 30513892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 601
Target Start/End: Original strand, 30554195 - 30554232
Alignment:
Q  564 cagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  30554195 cagcagtagttaactaccgctgacttataactagaaaa 30554232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 8367019 - 8367071
Alignment:
Q  507 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 559  Q
    ||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  8367019 ttgcttttttgacatccattgtttcctagaaacccatagaaatgaccaaaaac 8367071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 11727258 - 11727230
Alignment:
Q  235 tttagcagctaagaacaaaaaatttgttc 263  Q
    |||||||||||||||||||||||||||||    
T  11727258 tttagcagctaagaacaaaaaatttgttc 11727230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 606
Target Start/End: Original strand, 12075931 - 12075967
Alignment:
Q  570 tagttaactaccgctggcttataactagaaaatcggc 606  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  12075931 tagttaactaccgctgacttataactagaaaaccggc 12075967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 558
Target Start/End: Original strand, 35924595 - 35924635
Alignment:
Q  518 acattcattgttttctagaaacacatgaaaatgaccaaaaa 558  Q
    |||| |||| ||||||||||| |||||||||||||||||||    
T  35924595 acatccattattttctagaaaaacatgaaaatgaccaaaaa 35924635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 47680531 - 47680588
Alignment:
Q  197 tggttgttaaatcctacatggcatacttggacccacaatttagcagctaagaacaaaa 254  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  47680531 tggttgttaaatcctacatggcatacttggacccaatatttagcagctaagaacaaaa 47680588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 502 - 609
Target Start/End: Original strand, 30018564 - 30018670
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||||||||||||| |||  |||||||| |||||| | ||||||||||| ||||||||| | |||  |||||||||| |||  ||||||||||||||||    
T  30018564 gagaattgctttttg-acaaccattgtttcctagaagcgcatgaaaatgatcaaaaacactcaagcggtagttaactatcgcgtgcttataactagaaaa 30018662  T
Q  602 tcggcggt 609  Q
    ||||||||    
T  30018663 tcggcggt 30018670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 501 - 601
Target Start/End: Complemental strand, 49632995 - 49632894
Alignment:
Q  501 cgagaattgctttttg-gacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaa 599  Q
    |||||||||||||||  ||||| ||||| |||||||||||||||| ||||||||||||||| ||  |   ||||||||||||||||  ||||||||||||    
T  49632995 cgagaattgctttttttgacatccattgatttctagaaacacatggaaatgaccaaaaacatcctcgtggtagttaactaccgctgatttataactagaa 49632896  T
Q  600 aa 601  Q
    ||    
T  49632895 aa 49632894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 558
Target Start/End: Original strand, 11985458 - 11985492
Alignment:
Q  524 attgttttctagaaacacatgaaaatgaccaaaaa 558  Q
    |||||||||||||||||||||||||||||||||||    
T  11985458 attgttttctagaaacacatgaaaatgaccaaaaa 11985492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 605
Target Start/End: Original strand, 39065299 - 39065401
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||||| |||| | ||||| |||||||  ||||||||| ||| ||||||  ||||||||  |||  ||||||||||| ||||| |||||||||| ||||    
T  39065299 gagaattactttgttgacatccattgttccctagaaacatatggaaatgataaaaaacacttcagtgatagttaacta-cgctgacttataactaaaaaa 39065397  T
Q  602 tcgg 605  Q
    ||||    
T  39065398 tcgg 39065401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 47680406 - 47680488
Alignment:
Q  85 cagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat 167  Q
    ||||||| |||||| |||  | ||||||||||||||| ||||  || |||||||||| | ||||  |||||||||||||||||    
T  47680406 cagaaaaagtaagagaaggggagagagaagaggtataatggatgataagagaagaaacacgagggtcctacataaagtaaaat 47680488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 30018740 - 30018687
Alignment:
Q  507 ttgctttttggacattcattgttttctagaaa-cacatgaaaatgaccaaaaac 559  Q
    ||||||||| ||||| |||||||| ||||||| |||||| ||||||||||||||    
T  30018740 ttgcttttttgacatccattgtttcctagaaaacacatggaaatgaccaaaaac 30018687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 601
Target Start/End: Original strand, 8258910 - 8258991
Alignment:
Q  518 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||| |||||||| ||| ||||||||||||||||| |||||   | ||||  ||||||||||  | ||||||||||||||||||    
T  8258910 acatccattgtttcctaaaaacacatgaaaatgactaaaaaa--ctcagcggtagttaactattgttggcttataactagaaaa 8258991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 582
Target Start/End: Original strand, 36724171 - 36724251
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 582  Q
    ||||||| ||||||  |||||  ||||||||||||| |  ||| ||||||||||||||| |||||   |||||||||||||    
T  36724171 gagaattcctttttttacatttgttgttttctagaagcgtatggaaatgaccaaaaacatcccagtggtagttaactaccg 36724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 606
Target Start/End: Original strand, 42486436 - 42486472
Alignment:
Q  570 tagttaactaccgctggcttataactagaaaatcggc 606  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  42486436 tagttaactactgctggcttataactagaaaaccggc 42486472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 603
Target Start/End: Complemental strand, 27866752 - 27866672
Alignment:
Q  523 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaatc 603  Q
    |||||||| ||||||||| |||||||||||| |||||| || | | ||||||||||||||||| |||||||||||||||||    
T  27866752 cattgtttcctagaaacatatgaaaatgaccgaaaacaaccgaacgatagttaactaccgctgacttataactagaaaatc 27866672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 601
Target Start/End: Original strand, 48073016 - 48073099
Alignment:
Q  518 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||| ||||||  |||||||||||| ||||||||||||| || | ||| |||||||||||   |||||||||||||||||||    
T  48073016 acattctttgtttattagaaacacatggaaatgaccaaaaatactctagcgatagttaactattactggcttataactagaaaa 48073099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 570 - 614
Target Start/End: Original strand, 5617900 - 5617944
Alignment:
Q  570 tagttaactaccgctggcttataactagaaaatcggcggtcatta 614  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||    
T  5617900 tagttaactaccgctggcttataactagaaaaccggcggtaatta 5617944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 602
Target Start/End: Original strand, 21311760 - 21311792
Alignment:
Q  570 tagttaactaccgctggcttataactagaaaat 602  Q
    |||||||||||||||||||||||||||||||||    
T  21311760 tagttaactaccgctggcttataactagaaaat 21311792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 551
Target Start/End: Original strand, 36390712 - 36390756
Alignment:
Q  507 ttgctttttggacattcattgttttctagaaacacatgaaaatga 551  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||    
T  36390712 ttgcttttttgacatttagtgttttctagaaacacatgaaaatga 36390756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 27747373 - 27747425
Alignment:
Q  528 ttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 580  Q
    ||||||||||||||||||||||||| ||||| | | ||||  |||||||||||    
T  27747373 ttttctagaaacacatgaaaatgactaaaaataactcagcggtagttaactac 27747425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 555
Target Start/End: Complemental strand, 39933664 - 39933632
Alignment:
Q  523 cattgttttctagaaacacatgaaaatgaccaa 555  Q
    |||| ||||||||||||||||||||||||||||    
T  39933664 cattattttctagaaacacatgaaaatgaccaa 39933632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 524 - 601
Target Start/End: Original strand, 30351451 - 30351528
Alignment:
Q  524 attgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |  |||||||||||  ||  |||||||||||||||    
T  30351451 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataactagaaaa 30351528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 596
Target Start/End: Original strand, 3806174 - 3806267
Alignment:
Q  502 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataacta 596  Q
    |||||||||||||   |||| ||| ||||||||||||||||| |||| ||||||||||| |||| ||||| | |||||| |||| ||||||||||    
T  3806174 gagaattgcttttgtcacatccatcgttttctagaaacacataaaaa-gaccaaaaacatcccaacaataatcaactacagctgacttataacta 3806267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 558
Target Start/End: Original strand, 13613749 - 13613796
Alignment:
Q  511 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 558  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||    
T  13613749 tttttcgacatctattgttttctagaaacacatgaaaatgaccaaaaa 13613796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 518 - 585
Target Start/End: Complemental strand, 16396719 - 16396652
Alignment:
Q  518 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 585  Q
    |||| ||||||||| |||||| || |||||||||| |||||||||||| |  ||||||||||||||||    
T  16396719 acatccattgttttttagaaatacgtgaaaatgactaaaaacaccccaacggtagttaactaccgctg 16396652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 562 - 601
Target Start/End: Original strand, 26221247 - 26221286
Alignment:
Q  562 cccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  26221247 cccagcaatagttaacaaccgctggcttataactagaaaa 26221286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 18142493 - 18142429
Alignment:
Q  537 aacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||||||||||||| ||||||||| ||||  |||||||||| |||| | |||| |||||||||    
T  18142493 aacacatgaaaatgactaaaaacacctcagcggtagttaactagcgcttgtttatgactagaaaa 18142429  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 601
Target Start/End: Complemental strand, 12120220 - 12120174
Alignment:
Q  555 aaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||| ||||||||  ||||||||||||||| ||||||||||||||||    
T  12120220 aaaataccccagcggtagttaactaccgctagcttataactagaaaa 12120174  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 603
Target Start/End: Complemental strand, 16185370 - 16185328
Alignment:
Q  561 ccccagcaatagttaactaccgctggcttataactagaaaatc 603  Q
    |||||||  ||||||||||||| ||||||||||||||||||||    
T  16185370 ccccagcggtagttaactaccgttggcttataactagaaaatc 16185328  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 609
Target Start/End: Complemental strand, 13613854 - 13613814
Alignment:
Q  569 atagttaactaccgctggcttataactagaaaatcggcggt 609  Q
    ||||||||||||| ||||||| |||||||||||||| ||||    
T  13613854 atagttaactaccactggcttctaactagaaaatcgacggt 13613814  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 22997065 - 22997001
Alignment:
Q  537 aacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||||||||||||||||||| ||  ||||  |||||||||||  || | ||||||||||||||    
T  22997065 aacacatgaaaatgaccaaaaatacttcagcggtagttaactacaacttgtttataactagaaaa 22997001  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 23791336 - 23791400
Alignment:
Q  537 aacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||||||||||||||||||| ||  ||||  |||||||||||  || | ||||||||||||||    
T  23791336 aacacatgaaaatgaccaaaaatacttcagcggtagttaactacaacttgtttataactagaaaa 23791400  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 505 - 601
Target Start/End: Complemental strand, 37629704 - 37629609
Alignment:
Q  505 aattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||||||||  ||||| |||| ||  || ||||||||| |||||||||||||||  | | | ||||||||||||||||| |||||||||||||||    
T  37629704 aattgcttttttcacatttattgcttcttaaaaacacatggaaatgaccaaaaacattc-atcgatagttaactaccgctgacttataactagaaaa 37629609  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 589
Target Start/End: Original strand, 13793669 - 13793751
Alignment:
Q  507 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggctt 589  Q
    ||||| ||| ||||| ||||||||  |||||||| |||| ||||||||||||||||||| |  ||||||||||| | ||||||    
T  13793669 ttgctgttttgacatccattgtttcttagaaacatatgagaatgaccaaaaacaccccaacggtagttaactacggttggctt 13793751  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 559
Target Start/End: Original strand, 37096596 - 37096644
Alignment:
Q  511 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 559  Q
    ||||| ||| |||||||||||||||||||||||| |||||| |||||||    
T  37096596 ttttttgaccttcattgttttctagaaacacatggaaatgatcaaaaac 37096644  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 593
Target Start/End: Complemental strand, 39994590 - 39994519
Alignment:
Q  523 cattgttttctagaaacacatgaaaatga-ccaaaaacaccccagcaatagttaactaccgctggcttataa 593  Q
    |||||||||||||||||||||| |||||| ||||||| |  ||| ||| |||||||||||| || |||||||    
T  39994590 cattgttttctagaaacacatggaaatgacccaaaaaaattccaacaacagttaactaccgttgacttataa 39994519  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 609
Target Start/End: Complemental strand, 4984049 - 4984009
Alignment:
Q  569 atagttaactaccgctggcttataactagaaaatcggcggt 609  Q
    ||||||||||||||||  |||||||||||||||||| ||||    
T  4984049 atagttaactaccgctaacttataactagaaaatcgacggt 4984009  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 601
Target Start/End: Original strand, 13798841 - 13798881
Alignment:
Q  561 ccccagcaatagttaactaccgctggcttataactagaaaa 601  Q
    |||||||| |||||||||||||||| ||||||||| |||||    
T  13798841 ccccagcagtagttaactaccgctgacttataactcgaaaa 13798881  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 602
Target Start/End: Original strand, 26024 - 26056
Alignment:
Q  570 tagttaactaccgctggcttataactagaaaat 602  Q
    |||||||||||||||| ||||||||||||||||    
T  26024 tagttaactaccgctgacttataactagaaaat 26056  T

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