View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17070_high_6 (Length: 375)
Name: NF17070_high_6
Description: NF17070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17070_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 25 - 354
Target Start/End: Complemental strand, 20670867 - 20670538
Alignment:
| Q |
25 |
gacatcatcaagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtaggtatacgagagtaacgagggaggaggagg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20670867 |
gacatcatcaagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtagggatacgagagtaacgagggaggaggagg |
20670768 |
T |
|
| Q |
125 |
aggtcagtgtagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgagggatgaagagtg |
224 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20670767 |
aggtcagcgtagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgaggaatgaagagtg |
20670668 |
T |
|
| Q |
225 |
ttaggctaagtgatggatgtgagattgataagatgcttacccatttgtttacgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttc |
324 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20670667 |
ttaggctaagtgatggatgggagattgataagatgcttacccatttgtttatgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttc |
20670568 |
T |
|
| Q |
325 |
ttgcattgccaatggtggagttgatgatgt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20670567 |
ttgcattgccaatggtggagttgatgatgt |
20670538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University