View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17070_high_9 (Length: 325)

Name: NF17070_high_9
Description: NF17070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17070_high_9
NF17070_high_9
[»] chr1 (10 HSPs)
chr1 (22-325)||(4570774-4571082)
chr1 (91-320)||(4014949-4015185)
chr1 (108-320)||(10218835-10219054)
chr1 (91-315)||(21855367-21855592)
chr1 (91-316)||(4016756-4016981)
chr1 (108-319)||(4366496-4366708)
chr1 (97-228)||(17560763-17560894)
chr1 (97-228)||(39379051-39379182)
chr1 (123-172)||(15961233-15961282)
chr1 (106-182)||(50645484-50645560)
[»] chr5 (5 HSPs)
chr5 (91-315)||(24330883-24331108)
chr5 (107-182)||(18964830-18964905)
chr5 (109-182)||(29597554-29597627)
chr5 (109-182)||(29642354-29642427)
chr5 (109-182)||(29647671-29647744)
[»] chr3 (1 HSPs)
chr3 (107-228)||(3625683-3625804)
[»] chr7 (26 HSPs)
chr7 (107-319)||(29859311-29859524)
chr7 (107-208)||(29874480-29874581)
chr7 (107-228)||(29921993-29922114)
chr7 (108-228)||(29867188-29867305)
chr7 (107-228)||(29454103-29454224)
chr7 (108-319)||(29106665-29106883)
chr7 (108-228)||(29881205-29881325)
chr7 (107-177)||(14076678-14076748)
chr7 (107-177)||(14386706-14386776)
chr7 (244-319)||(29885105-29885180)
chr7 (244-319)||(29899225-29899300)
chr7 (107-177)||(29431001-29431071)
chr7 (106-166)||(1985954-1986014)
chr7 (114-225)||(29445663-29445774)
chr7 (109-179)||(29899372-29899442)
chr7 (107-172)||(660847-660912)
chr7 (108-171)||(19604464-19604527)
chr7 (109-177)||(19344577-19344645)
chr7 (107-171)||(22100499-22100563)
chr7 (106-153)||(18514786-18514833)
chr7 (107-182)||(20352090-20352165)
chr7 (107-161)||(6864807-6864861)
chr7 (130-178)||(9807823-9807871)
chr7 (275-319)||(29881113-29881157)
chr7 (192-228)||(29920128-29920164)
chr7 (275-319)||(29922156-29922200)
[»] chr4 (8 HSPs)
chr4 (97-228)||(3557675-3557806)
chr4 (97-228)||(3560948-3561079)
chr4 (97-228)||(3565693-3565824)
chr4 (107-182)||(53774835-53774910)
chr4 (107-182)||(11970982-11971057)
chr4 (108-169)||(53430100-53430161)
chr4 (107-182)||(11981683-11981758)
chr4 (97-228)||(1686275-1686406)
[»] chr6 (6 HSPs)
chr6 (106-177)||(6921349-6921420)
chr6 (109-177)||(6954521-6954589)
chr6 (107-166)||(6947880-6947939)
chr6 (107-166)||(17369675-17369734)
chr6 (107-182)||(20770645-20770720)
chr6 (106-172)||(6935217-6935283)
[»] chr2 (3 HSPs)
chr2 (106-153)||(14514924-14514971)
chr2 (111-177)||(20975558-20975624)
chr2 (107-171)||(554482-554546)
[»] scaffold0867 (1 HSPs)
scaffold0867 (107-171)||(4669-4733)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 325
Target Start/End: Complemental strand, 4571082 - 4570774
Alignment:
Q  22 catcatcagaaagaaataatagcatcagttgaaaataccttttgtcactgtcacgcaagtcatagtaagctattagaagatcactataactaattttaag 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571082 catcgtcagaaagaaataatagcatcagttgaaaataccttttgtcactgtcacgcaagtcatagtaagctattagaagatcactataactaattttaag 4570983  T
Q  122 caattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaaaggcagcctcccaac 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4570982 caattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagcctcccaac 4570883  T
Q  222 ----acaccaatagta-gcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgcctccaaatcaagagaaacaata 316  Q
        |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4570882 acacacaccaatagtaggctagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaata 4570783  T
Q  317 acagcttgt 325  Q
    |||||||||    
T  4570782 acagcttgt 4570774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 91 - 320
Target Start/End: Original strand, 4014949 - 4015185
Alignment:
Q  91 ctattagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatca------gttac 184  Q
    ||||||||||||||   ||||||| |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||| | ||||      ||| |    
T  4014949 ctattagaagatcatggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaatatcaaaatgagtttc 4015048  T
Q  185 cctgtgtgaataagaaaaacaaaggcagcctcccaacacaccaatag-tagcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattg 283  Q
    ||||||  ||||||||||||||||||||||||||| ||||||||||| | || |||  ||| ||||||||||||| |||||||| ||  ||||||| |||    
T  4015049 cctgtgcaaataagaaaaacaaaggcagcctcccagcacaccaatagttggcgagtcaggcagcacttcatcaacgccacgaggaactgtgtattgcttg 4015148  T
Q  284 tatgtctccgcctccaaatcaagagaaacaataacag 320  Q
    || | ||| | |||||||||||| |||||||||||||    
T  4015149 tacgcctctgtctccaaatcaagtgaaacaataacag 4015185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 108 - 320
Target Start/End: Complemental strand, 10219054 - 10218835
Alignment:
Q  108 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaaa 207  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||| || ||||  || ||||||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagtttccttgtgcaaaaaagaaaaacaaa 10218955  T
Q  208 ggcagcctcccaacacaccaatagtag----caagttcg---gcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgcctccaa 300  Q
    |||| || ||||||||||||||||| |       || ||   ||| ||||| |||||  ||||  |||||||||||||||||||||||||||| ||||||    
T  10218954 ggcaaccccccaacacaccaatagttggtgtgttgtacgaatgcgtcacttgatcaaaaccacagggcaccatgtattgattgtatgtctccgtctccaa 10218855  T
Q  301 atcaagagaaacaataacag 320  Q
    ||||||||||||||||||||    
T  10218854 atcaagagaaacaataacag 10218835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 91 - 315
Target Start/End: Original strand, 21855367 - 21855592
Alignment:
Q  91 ctattagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtg 190  Q
    |||||||||||| |   ||||||| |||||| | ||||||||||||||||||||||||||||| ||||||   ||||||||| ||||| ||| || |||     
T  21855367 ctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgta 21855466  T
Q  191 tgaataagaaaaacaaaggcagcctcccaacacaccaatag-tagcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtc 289  Q
     ||||| ||||||||||| ||||| | ||| |||||||||| | ||   |||||||| ||||||||||  ||| ||||||  ||||||||||||||||||    
T  21855467 cgaatatgaaaaacaaagacagcccctcaatacaccaatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtc 21855566  T
Q  290 tccgcctccaaatcaagagaaacaat 315  Q
    |||| |||||||||||||||||||||    
T  21855567 tccgtctccaaatcaagagaaacaat 21855592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 91 - 316
Target Start/End: Original strand, 4016756 - 4016981
Alignment:
Q  91 ctattagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtg 190  Q
    ||||||||||||||   ||||||| ||||| ||| |||||||| ||||||||||| ||||||||||||||  |||| |||  |||||  |||  ||| |     
T  4016756 ctattagaagatcatggtaactaaatttaaacaactgagtccaggaatcttcaactccaaatttcttcatctgccagatacagaaattggtttgcctata 4016855  T
Q  191 tgaataagaaaaacaaaggcagcctcccaacacaccaatagtag-caagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtc 289  Q
     ||||||||||||||||||||||| |||||||||| |||||| | || ||   ||||| ||| |||||  ||||||||||||||||||||||||||||||    
T  4016856 ggaataagaaaaacaaaggcagccccccaacacactaatagttggcatgtaaagcggccctttatcaaaaccacgaggcaccatgtattgattgtatgtc 4016955  T
Q  290 tccgcctccaaatcaagagaaacaata 316  Q
    |||| | ||||||||||||||||||||    
T  4016956 tccgtc-ccaaatcaagagaaacaata 4016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 319
Target Start/End: Original strand, 4366496 - 4366708
Alignment:
Q  108 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaaa 207  Q
    ||||||| |||||| ||| |||||||||| ||||||||||| |||||||||||  |||||| ||| |||||||||  | |||  ||||||||||||||||    
T  4366496 taactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaaatcagttttcttgtaagaataagaaaaacaaa 4366595  T
Q  208 ggcagcctcccaacacaccaatagtagcaagttc----ggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgcctccaaatc 303  Q
    ||||| | |||||||||||||  || |   ||||    || |||||||| ||||  |||||||||| || |||||||||||||||||| |   ||| |||    
T  4366596 ggcagtcccccaacacaccaactgttg---gttcagtaggtggcacttcttcaaaaccacgaggcagcaagtattgattgtatgtctctgtacccagatc 4366692  T
Q  304 aagagaaacaataaca 319  Q
    ||| ||||||||||||    
T  4366693 aagcgaaacaataaca 4366708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 17560763 - 17560894
Alignment:
Q  97 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaata 196  Q
    |||||||  ||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||  |||||||||| |||||  || || |||   ||||    
T  17560763 gaagatcgttataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaatcgatttccttgtaacaata 17560862  T
Q  197 agaaaaacaaaggcagcctcccaacacaccaa 228  Q
    |||||||||||| ||| | |||||||||||||    
T  17560863 agaaaaacaaagacagtcccccaacacaccaa 17560894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 39379051 - 39379182
Alignment:
Q  97 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaata 196  Q
    ||||||||  |||||| |||||||| |||||||||||||| |||||||||||||||| ||||||  |||||||||  |||||||||   ||||   ||||    
T  39379051 gaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcagtttttctgtaacaata 39379150  T
Q  197 agaaaaacaaaggcagcctcccaacacaccaa 228  Q
    |||||||||||| ||| | |||||||||||||    
T  39379151 agaaaaacaaagacagtcacccaacacaccaa 39379182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 15961282 - 15961233
Alignment:
Q  123 aattgagtccaagaatcttcaaccccaaatttcttcattcgccatataac 172  Q
    |||||||||||||| |||||| | |||||||||||||||  |||||||||    
T  15961282 aattgagtccaagattcttcagctccaaatttcttcattttccatataac 15961233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 50645484 - 50645560
Alignment:
Q  106 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    |||||||||||||||  |||||| ||||||| |||| ||| ||||| | ||||||| |||| ||||| |||| ||||    
T  50645484 tataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagtt 50645560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 91 - 315
Target Start/End: Original strand, 24330883 - 24331108
Alignment:
Q  91 ctattagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtg 190  Q
    |||||||||||| |   ||||||| |||||| | ||||||||||||||||||||||||||||| ||||||   ||||||||| ||||| ||| || |||     
T  24330883 ctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgta 24330982  T
Q  191 tgaataagaaaaacaaaggcagcctcccaacacaccaatag-tagcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtc 289  Q
     ||||| ||||||||||| ||||| | ||| |||||||||| | ||   |||||||| ||||||||||  ||| ||||||  ||||||||||||||||||    
T  24330983 cgaatatgaaaaacaaagacagcccctcaatacaccaatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtc 24331082  T
Q  290 tccgcctccaaatcaagagaaacaat 315  Q
    |||| |||||||||||||||||||||    
T  24331083 tccgtctccaaatcaagagaaacaat 24331108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 18964830 - 18964905
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    ||||| ||||||||| |||||||||||||| |||||||| ||||||| ||||||| ||||||||| ||||| ||||    
T  18964830 ataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtt 18964905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 29597554 - 29597627
Alignment:
Q  109 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    ||||||||||||| |||||||||||||| | |||||| |||||||   ||||| |||||||||| |||| ||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtt 29597627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 29642427 - 29642354
Alignment:
Q  109 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    ||||||||||||| |||||||||||||| | |||||  |||||||   ||||| ||||||||||||||| ||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagtt 29642354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 29647744 - 29647671
Alignment:
Q  109 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    ||||||||||||| |||||||||||||| | |||||  |||||||   ||||| |||||||||| |||| ||||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagtt 29647671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 3625804 - 3625683
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaa 206  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||  | ||  |||||| |||  |||||||||||||||    
T  3625804 ataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataataagataggttaccttgtaagaataagaaaaacaa 3625705  T
Q  207 aggcagcctcccaacacaccaa 228  Q
    |||||| | |||||||||||||    
T  3625704 aggcagtcccccaacacaccaa 3625683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 319
Target Start/End: Complemental strand, 29859524 - 29859311
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaa 206  Q
    ||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||   |||||||||||||||| || || |||   ||||||||||||||    
T  29859524 ataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgtaacaataagaaaaacaa 29859425  T
Q  207 aggcagcctcccaacacaccaatagtagcaagttc-ggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgcctccaaatcaa 305  Q
    ||   | | ||||||||||||||||| |  |   | |||||||| ||||||| |||||||||||  | ||||||||||||||| ||   | |||||||||    
T  29859424 agatggtcccccaacacaccaatagttggtatcacaggcggcacctcatcaaacccacgaggcaataagtattgattgtatgtttcactccccaaatcaa 29859325  T
Q  306 gagaaacaataaca 319  Q
    | ||||||||||||    
T  29859324 gtgaaacaataaca 29859311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 29874581 - 29874480
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaa 206  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |||   ||||||||||||||    
T  29874581 ataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagtttccttgtaacaataagaaaaacaa 29874482  T
Q  207 ag 208  Q
    ||    
T  29874481 ag 29874480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 29921993 - 29922114
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaa 206  Q
    |||||||||| |||| ||||||| ||||||||||||| ||||||||||||||||  |||||||||| ||||||||| |  |||  | |||||||||||||    
T  29921993 ataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtttctttgtaagcataagaaaaacaa 29922092  T
Q  207 aggcagcctcccaacacaccaa 228  Q
    |||||||| |||||||||||||    
T  29922093 aggcagccccccaacacaccaa 29922114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 29867305 - 29867188
Alignment:
Q  108 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaaa 207  Q
    ||||||||| |||| |||||||||||||||||||||||||| |||||||||||| |||||||||  ||||||||| ||   |  ||||||||||||||||    
T  29867305 taactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttcc---ttagaataagaaaaacaaa 29867209  T
Q  208 ggcagcctcccaacacaccaa 228  Q
    ||||| | |||||||||||||    
T  29867208 ggcagtcccccaacacaccaa 29867188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 29454103 - 29454224
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaa 206  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||||| | | || |||  |||||||||||||||    
T  29454103 ataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaatcgggttccttgtaagaataagaaaaacaa 29454202  T
Q  207 aggcagcctcccaacacaccaa 228  Q
    ||||  || ||||| |||||||    
T  29454203 aggcttccccccaaaacaccaa 29454224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 108 - 319
Target Start/End: Complemental strand, 29106883 - 29106665
Alignment:
Q  108 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatca------gttaccctgtgtgaataagaaa 201  Q
    |||||||||||||  | |||||||||||| |||||||||||||||||||||||  |||||| ||| ||||||      |||     || | |||||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaatcaaaatctgtttttacgtataaataagaaa 29106784  T
Q  202 aacaaaggcagcctcccaacacaccaatagtagcaagttcgg-cggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctcc-gcctcca 299  Q
    ||||||||||||| |||||||||||||  || |   |||  | |||||||||||||| ||||||||||| | ||||||||||||||||||||  |||||     
T  29106783 aacaaaggcagccccccaacacaccaactgttggccgttttgacggcacttcatcaaacccacgaggcaacttgtattgattgtatgtctccatcctcc- 29106685  T
Q  300 aatcaagagaaacaataaca 319  Q
    ||||||| ||||||||||||    
T  29106684 aatcaagtgaaacaataaca 29106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 29881325 - 29881205
Alignment:
Q  108 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaaa 207  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| | ||  ||||||||| || |||   ||||| |||| ||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaatcagtttccttgtaacaataacaaaagcaaa 29881226  T
Q  208 ggcagcctcccaacacaccaa 228  Q
    ||||| |  ||||||||||||    
T  29881225 ggcagtcctccaacacaccaa 29881205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 14076748 - 14076678
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaat 177  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||    
T  14076748 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14076678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 14386776 - 14386706
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaat 177  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||    
T  14386776 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 29885180 - 29885105
Alignment:
Q  244 cggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgcctccaaatcaagagaaacaataaca 319  Q
    |||||||||||||| |||| |||||| |||||| || || |||||||||| |||||||||||| ||||||||||||    
T  29885180 cggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaatcaagtgaaacaataaca 29885105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 29899300 - 29899225
Alignment:
Q  244 cggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgcctccaaatcaagagaaacaataaca 319  Q
    |||||||||||||| |||| |||||| |||||| || || |||||||||| |||||||||||| ||||||||||||    
T  29899300 cggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaatcaagtgaaacaataaca 29899225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 29431001 - 29431071
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaat 177  Q
    ||||||||||||||| ||||| ||||||||||||| | ||||||||||| |||| ||||||||||| ||||    
T  29431001 ataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaat 29431071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 1985954 - 1986014
Alignment:
Q  106 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgcca 166  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  1985954 tataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgcca 1986014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 29445663 - 29445774
Alignment:
Q  114 attttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaataagaaaaacaaaggcagc 213  Q
    ||||| || |||||||||||||| ||||||||||| |||| ||||||  |||||||||  ||||| ||| || |||   |||||||| |||||||| |||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggtttccttgtaaaaataagaacaacaaaggaagc 29445762  T
Q  214 ctcccaacacac 225  Q
    | ||||||||||    
T  29445763 cccccaacacac 29445774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 29899442 - 29899372
Alignment:
Q  109 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatca 179  Q
    |||||||||| |  ||||||||||| || |||||||||||||||||||||||  |||||||||| ||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaatca 29899372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 660847 - 660912
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataac 172  Q
    ||||||||||||||| |||||||||||||| |||||||| | ||||| ||||||  ||||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataac 660912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 19604464 - 19604527
Alignment:
Q  108 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataa 171  Q
    |||||||||||||| ||||||||||| || |||||||| ||||||| ||||||  |||||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataa 19604527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 19344577 - 19344645
Alignment:
Q  109 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaat 177  Q
    ||||||||||||| |||||||||||||| | |||||| ||||||| | ||||  |||||||||| ||||    
T  19344577 aactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaat 19344645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 22100563 - 22100499
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataa 171  Q
    |||||||||||| |  || ||||||||||| |||| ||| ||||||||||||||| |||||||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataa 22100499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 18514786 - 18514833
Alignment:
Q  106 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatt 153  Q
    |||||||||||||||| |||||||||||||| | |||||| |||||||    
T  18514786 tataactaattttaaggaattgagtccaagagttttcaactccaaatt 18514833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 20352165 - 20352090
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    ||||||||||||||  | ||||||||| ||||||||||| ||||||| |||||||  |||||| || |||| ||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagtt 20352090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 6864807 - 6864861
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatt 161  Q
    ||||||| ||||||| || ||||||||||| |||||||| ||||||| |||||||    
T  6864807 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 6864861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 9807871 - 9807823
Alignment:
Q  130 tccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatc 178  Q
    ||||||| |||||||| ||||||| ||||||  ||||||||||||||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatc 9807823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 29881157 - 29881113
Alignment:
Q  275 tattgattgtatgtctccgcctccaaatcaagagaaacaataaca 319  Q
    ||||||||||||||||| | | |||||||||| ||||||||||||    
T  29881157 tattgattgtatgtctcagtccccaaatcaagtgaaacaataaca 29881113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 29920128 - 29920164
Alignment:
Q  192 gaataagaaaaacaaaggcagcctcccaacacaccaa 228  Q
    ||||||||| || ||||||||||||||||||||||||    
T  29920128 gaataagaagaaaaaaggcagcctcccaacacaccaa 29920164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 29922156 - 29922200
Alignment:
Q  275 tattgattgtatgtctccgcctccaaatcaagagaaacaataaca 319  Q
    ||||||||||||||||||| | | |||||||||||||| ||||||    
T  29922156 tattgattgtatgtctccgtccctaaatcaagagaaacgataaca 29922200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 3557806 - 3557675
Alignment:
Q  97 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaata 196  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||  |||||||||  ||||| ||| || |||  |||||    
T  3557806 gaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttgtaagaata 3557707  T
Q  197 agaaaaacaaaggcagcctcccaacacaccaa 228  Q
    |||||||||||| ||| | | |||||||||||    
T  3557706 agaaaaacaaagacagtccctcaacacaccaa 3557675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 3560948 - 3561079
Alignment:
Q  97 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaata 196  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||  |||| ||||  ||||| ||| || |||  |||||    
T  3560948 gaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaata 3561047  T
Q  197 agaaaaacaaaggcagcctcccaacacaccaa 228  Q
    |||||||||||||||  | ||||| |||||||    
T  3561048 agaaaaacaaaggcaatcccccaagacaccaa 3561079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 3565824 - 3565693
Alignment:
Q  97 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaata 196  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||  |||||||||  ||||| |||  | | |   ||||    
T  3565824 gaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaata 3565725  T
Q  197 agaaaaacaaaggcagcctcccaacacaccaa 228  Q
    |||||||||||||||| | | |||||||||||    
T  3565724 agaaaaacaaaggcagtccctcaacacaccaa 3565693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 53774910 - 53774835
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| |||||||||| |||| ||||    
T  53774910 ataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtt 53774835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 11970982 - 11971057
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    |||||||||| |||| |||||||||||||| ||||| || ||||||| ||||||| |||||||||| |||| ||||    
T  11970982 ataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagtt 11971057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 53430100 - 53430161
Alignment:
Q  108 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatat 169  Q
    |||||||||||||| ||||||||||||||||||||  ||||| ||||||||||  |||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatat 53430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 11981683 - 11981758
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    ||||||||||||||| ||| ||||||| || ||||| || ||||||| ||||||| |||||||||| |||| ||||    
T  11981683 ataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagtt 11981758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 1686275 - 1686406
Alignment:
Q  97 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagttaccctgtgtgaata 196  Q
    ||||||||  |||||||  |||||| |||||||||||||| || ||||| ||||||| ||||||  |||||||||  | ||  ||   | | |  |||||    
T  1686275 gaagatcataataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataataagattggtcctcttataagaata 1686374  T
Q  197 agaaaaacaaaggcagcctcccaacacaccaa 228  Q
    |||||||||||||||| | |||||||||||||    
T  1686375 agaaaaacaaaggcagtcccccaacacaccaa 1686406  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 6921349 - 6921420
Alignment:
Q  106 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaat 177  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| |||| ||||| ||||    
T  6921349 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 6921420  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 6954521 - 6954589
Alignment:
Q  109 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaat 177  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||| ||||||| |||| ||||| ||||    
T  6954521 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 6954589  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 6947880 - 6947939
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgcca 166  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| ||||    
T  6947880 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 6947939  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 17369734 - 17369675
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgcca 166  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| ||||    
T  17369734 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 20770720 - 20770645
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaatcagtt 182  Q
    ||||||||||||||| |||||| |||| || |||||||  ||||||| ||||||| |||||||||| |||| ||||    
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtt 20770645  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 6935217 - 6935283
Alignment:
Q  106 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataac 172  Q
    |||||||||||||||| |||| ||||||||| |||| ||| ||||||| ||||||| |||| |||||    
T  6935217 tataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataac 6935283  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 14514971 - 14514924
Alignment:
Q  106 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatt 153  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  14514971 tataactaattttaaggaattgagtccaagaatcttcaactccaaatt 14514924  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 20975624 - 20975558
Alignment:
Q  111 ctaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataacgaaat 177  Q
    |||| ||||| ||||||| |||||||||||||||| ||||||| | ||||| |||||||||| ||||    
T  20975624 ctaaatttaaacaattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaat 20975558  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 554546 - 554482
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataa 171  Q
    ||||||||||||||| |||||||||||||| |||| ||| ||| |||   ||||| |||||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataa 554482  T

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Target: scaffold0867 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 4669 - 4733
Alignment:
Q  107 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcattcgccatataa 171  Q
    |||||||||||| |  || ||||||||||| |||| ||| ||||||||||||||| |||||||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataa 4733  T

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