View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17070_low_1 (Length: 883)
Name: NF17070_low_1
Description: NF17070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17070_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 12 - 545
Target Start/End: Complemental strand, 29621199 - 29620666
Alignment:
| Q |
12 |
tcaaatccaacactcttatgattgctatgtttctacctataaagttttttcaccaagtctacccctaaagtttgaaacttctccattgactattagtatt |
111 |
Q |
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| T |
29621199 |
tcaaatccaacactcttatgattgctatgtttctacctataaagttttttcaccaagtctacccctaaagtttgaaacttctccattgactattagtatt |
29621100 |
T |
|
| Q |
112 |
taataatgatgtatgcgcgtgcagtttttcttatatacttcatccagtcattattataagtaaatatttcattttaaggttcattgaataacttatatat |
211 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29621099 |
taataatgatgtatgcgcgtgcagtttttcctatatacttcatccggtcattattataagtaaatatttcattttaaggttcattgaataacttatatat |
29621000 |
T |
|
| Q |
212 |
ttagactatactatagtttcagataaatacgttagttattcaataaacctgaaaatgaaatatctgcttatatttcattttaagattcattgaataactt |
311 |
Q |
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|||||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29620999 |
ttagactatattatagtttcagatagatacgttaattattcaataaacttgaaaatgaaatatcggcttatatttcattttaagattcattgaataactt |
29620900 |
T |
|
| Q |
312 |
atgtacctagactatattatggttcagatagatacgtcagttattcaataaacttgcaaatggaatatcagcttataagactgaccggatggagtacacg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
29620899 |
atgtacctagactatattatggttcagatagatacgtcagttattcaataaacttgcaaatggaatatctgcttataagactgaccggatggagtacatg |
29620800 |
T |
|
| Q |
412 |
tacacgattatgaacttgtagttgggattgcacaactttttcaaggagatgcttaaaagaagagacactcattcatcttatttatttcagggcttgcagt |
511 |
Q |
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| T |
29620799 |
tacacgattttgaacttgtagttaggattgcacaactttttcaaggagatgcttaaaagaagagacactcattcatcttatttatttcagggcttgcagg |
29620700 |
T |
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| Q |
512 |
acattcgctgcggtaatgacaatatggccaacag |
545 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
29620699 |
acattcgctgcggtaatgacaatatggccaacag |
29620666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 536 - 868
Target Start/End: Complemental strand, 29620365 - 29620031
Alignment:
| Q |
536 |
tggccaacagtgacagaacaatatctctggaaatccaattcctatagcatcacaacttctgttaagcctgactgccctactgccaagacaggtctcatgg |
635 |
Q |
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| T |
29620365 |
tggccaacagtgacagaacaatatctctggaaatccaattcctatagcatcagaacttctgttaagcctgactgccctactgccaagacaggtctcatgg |
29620266 |
T |
|
| Q |
636 |
gtagtgcagcattcttgagtcttaattcatctctcttctggctattatctctaatgttggtgaaaaatgcaagagaagactatcttgaagatgtgcaagt |
735 |
Q |
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| T |
29620265 |
gtagtgcagcattcttgagccttaactcatctctcttctggctattatccctaatgttggtgaaaaatgcaagagaggactatcttgaagatgtgcaagt |
29620166 |
T |
|
| Q |
736 |
tgttctctcaaattccatatagcttgttctctttttcttttacacggttatctatttatgaatagatagcatctttttcatcattg--tatattctattc |
833 |
Q |
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| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |||| || |||||||||||| |
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| T |
29620165 |
ttctctctcaaattccatatagcttgttctctttttattttacacggttatatatttatgaatagatagtatcttctttatcagtgtatatattctattc |
29620066 |
T |
|
| Q |
834 |
ttcagaatttcagagtaacctattcaaactatatt |
868 |
Q |
| |
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||| ||||||||||| ||||||||||||||||||| |
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| T |
29620065 |
ttctgaatttcagaggaacctattcaaactatatt |
29620031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 8036542 - 8036612
Alignment:
| Q |
158 |
gtcattattataagtaaatatttcattttaaggttcattgaataacttatatatttagactatactatagt |
228 |
Q |
| |
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|||| ||||||||| |||||||| |||| ||||||||||||||||| || ||||||| |||| |||||| |
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| T |
8036542 |
gtcactattataagcaaatatttattttttaggttcattgaataactgatgtatttagtttataatatagt |
8036612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 611 - 726
Target Start/End: Original strand, 1792671 - 1792788
Alignment:
| Q |
611 |
cctactgccaagacaggtctcatgggtagtgcagcattcttgagtcttaattcat--ctctcttctggctattatctctaatgttggtgaaaaatgcaag |
708 |
Q |
| |
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|||||||||||||| ||||||||||| |||| ||||||||| |||||||||||| || | || ||||| ||||| |||||| |||| ||||||| ||| |
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| T |
1792671 |
cctactgccaagactggtctcatgggcagtggggcattcttgtgtcttaattcatcactttattttggcttttatccctaatgctggtaaaaaatgtaag |
1792770 |
T |
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| Q |
709 |
agaagactatcttgaaga |
726 |
Q |
| |
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||| ||||||||| |||| |
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| T |
1792771 |
agaggactatcttcaaga |
1792788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 489 - 552
Target Start/End: Original strand, 1792543 - 1792606
Alignment:
| Q |
489 |
ttatttatttcagggcttgcagtacattcgctgcggtaatgacaatatggccaacagtgacaga |
552 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||| ||||||||| ||||||||||||||||||| |
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|
| T |
1792543 |
ttatttatttcagagcttgcagtgcattggctggtgtaatgacattatggccaacagtgacaga |
1792606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 28936018 - 28936063
Alignment:
| Q |
158 |
gtcattattataagtaaatatttcattttaaggttcattgaataact |
204 |
Q |
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|||||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
28936018 |
gtcattattataagcaaagatt-cattttaaggttcattgaataact |
28936063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 24235586 - 24235647
Alignment:
| Q |
163 |
tattataagtaaatatttcattttaaggttcattgaataacttatatatttagactatacta |
224 |
Q |
| |
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||||||||| ||||||| |||| || |||||||||||||| || |||||||||||||||| |
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| T |
24235586 |
tattataagcaaatattattttttcagattcattgaataactgatgtatttagactatacta |
24235647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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