View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17071_high_18 (Length: 305)
Name: NF17071_high_18
Description: NF17071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17071_high_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 42899016 - 42899320
Alignment:
| Q |
1 |
caacatgaacaatctccaaacacaagatatccaaggcttcacattgaagaaagagcatcaaagtttcaacatgttaaggccagaacaagaagtacaaata |
100 |
Q |
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| T |
42899016 |
caacatgaacaatctccaaactcaagatatccaaggcttcacattgaagaaagagcatcaaagtttcaacatgttaaggccagaacaagaagtacaaata |
42899115 |
T |
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| Q |
101 |
ccctcttggctttgtcaatcatccattgatctctcttcaaactattcaagtttggatcaagatctacacctttatgaaaaccctaaccctagaaatggtc |
200 |
Q |
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| T |
42899116 |
ccctcttggctttgtcaatcatccattgatctctcttcaaactattcaagtttggatcaagatctacacctttatgaaaaccctaaccctagaaatggtc |
42899215 |
T |
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| Q |
201 |
ctactcctacacttccatcctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaaccag |
300 |
Q |
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| T |
42899216 |
ctacttctacacttccatcctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaaccag |
42899315 |
T |
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| Q |
301 |
ctcat |
305 |
Q |
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| T |
42899316 |
ctcat |
42899320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 5787666 - 5787617
Alignment:
| Q |
248 |
cacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
297 |
Q |
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| T |
5787666 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
5787617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 36990837 - 36990900
Alignment:
| Q |
234 |
ctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
297 |
Q |
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| T |
36990837 |
ctgcaacttcacctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
36990900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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