View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_high_11 (Length: 408)

Name: NF17072_high_11
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_high_11
NF17072_high_11
[»] chr2 (2 HSPs)
chr2 (80-321)||(35732300-35732541)
chr2 (165-218)||(11781576-11781629)
[»] chr8 (4 HSPs)
chr8 (149-203)||(29447107-29447161)
chr8 (156-202)||(43534933-43534979)
chr8 (153-203)||(5813600-5813650)
chr8 (170-203)||(43300520-43300553)
[»] chr4 (2 HSPs)
chr4 (149-203)||(24613698-24613752)
chr4 (159-202)||(3587929-3587972)
[»] chr1 (3 HSPs)
chr1 (153-261)||(22881617-22881725)
chr1 (171-211)||(47892677-47892717)
chr1 (153-242)||(38078662-38078752)
[»] chr7 (2 HSPs)
chr7 (149-220)||(7438697-7438768)
chr7 (153-203)||(3262876-3262926)
[»] chr3 (1 HSPs)
chr3 (153-203)||(10335287-10335337)
[»] chr6 (2 HSPs)
chr6 (193-229)||(8159884-8159920)
chr6 (156-204)||(24102047-24102095)
[»] chr5 (1 HSPs)
chr5 (153-225)||(8420013-8420085)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 80 - 321
Target Start/End: Complemental strand, 35732541 - 35732300
Alignment:
Q  80 acacacaacctatgtagcaccaacacttccattaaaagtgtgaccaatgtccaacacatgtcggactctacatgacaccgacacttgtagttacattcaa 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35732541 acacacaacctatgtagcaccaaaacttccattaaaagtgtgaccaatgtccaacacatgtcggactctacatgacaccgacacttgtagttacattcaa 35732442  T
Q  180 atatttgactttctcaaattattacatatgtcgacatgtcattgtcatatccggtgtccgtgtatatgttggtgcttcatagcagttcaaaatctcctga 279  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35732441 atatttgactttctcaaattattacatatgtcaacatgtcattgtcatatccggtgtccgtgtatatgtcggtgcttcatagcagttcaaaatctcctga 35732342  T
Q  280 tacttatattagtttcaattagacagtgataaattgcagttc 321  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  35732341 tacttatattagtttcaattagacagtgataaattccagttc 35732300  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 11781576 - 11781629
Alignment:
Q  165 tgtagttacattcaaatatttgactttctcaaattattacatatgtcgacatgt 218  Q
    ||||||||||||||||||||| | ||||||||||||||||   |||||||||||    
T  11781576 tgtagttacattcaaatatttcattttctcaaattattactggtgtcgacatgt 11781629  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 29447107 - 29447161
Alignment:
Q  149 acatgacaccgacacttgtagttacattcaaatatttgactttctcaaattatta 203  Q
    |||||||||||||||||||||||||||| || ||| ||| |||||||||||||||    
T  29447107 acatgacaccgacacttgtagttacattgaattatgtgattttctcaaattatta 29447161  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 43534979 - 43534933
Alignment:
Q  156 accgacacttgtagttacattcaaatatttgactttctcaaattatt 202  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  43534979 accgacacatgtagttacattcaaatatttcattttctcaaattatt 43534933  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 5813650 - 5813600
Alignment:
Q  153 gacaccgacacttgtagttacattcaaatatttgactttctcaaattatta 203  Q
    |||||||||||||||| ||||| | |||||| ||||||| |||||||||||    
T  5813650 gacaccgacacttgtatttacactaaaatatgtgactttttcaaattatta 5813600  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 43300553 - 43300520
Alignment:
Q  170 ttacattcaaatatttgactttctcaaattatta 203  Q
    |||||||||||||||| |||||||||||||||||    
T  43300553 ttacattcaaatatttaactttctcaaattatta 43300520  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 24613698 - 24613752
Alignment:
Q  149 acatgacaccgacacttgtagttacattcaaatatttgactttctcaaattatta 203  Q
    |||||||||||||||||||| ||||||| || ||| ||| |||||||||||||||    
T  24613698 acatgacaccgacacttgtacttacattgaattatgtgattttctcaaattatta 24613752  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 3587972 - 3587929
Alignment:
Q  159 gacacttgtagttacattcaaatatttgactttctcaaattatt 202  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||    
T  3587972 gacacatgtggttacattcaaatatttcactttctcaaattatt 3587929  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 22881617 - 22881725
Alignment:
Q  153 gacaccgacacttgtagttacattcaaatatttgactttctcaaattattacatatgtcgacatgtcattgtcatatccggtgtccgtgtatatgttggt 252  Q
    |||||||||||||||| ||||| | || ||| ||| ||| |||||||||||  | ||||| | ||||| |||| | |||||||||||||| ||| |  ||    
T  22881617 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcgtgtccggtgtccgtgtctatatccgt 22881716  T
Q  253 gcttcatag 261  Q
    |||||||||    
T  22881717 gcttcatag 22881725  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 47892717 - 47892677
Alignment:
Q  171 tacattcaaatatttgactttctcaaattattacatatgtc 211  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  47892717 tacattcaaatatttcactttctcaaattattacatgtgtc 47892677  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 38078662 - 38078752
Alignment:
Q  153 gacaccgacacttgtagttacattcaaatatttgactttctcaaattattacatatgtcgacatgtcattg-tcatatccggtgtccgtgt 242  Q
    |||||||||||||||| ||||||| || ||| ||| ||| |||||||||||  | ||||||| ||||| || || | ||||||||||||||    
T  38078662 gacaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcgtgtccggtgtccgtgt 38078752  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 7438768 - 7438697
Alignment:
Q  149 acatgacaccgacacttgtagttacattcaaatatttgactttctcaaattattacatatgtcgacatgtca 220  Q
    |||||||||||||||||||| ||||||| || ||| ||| ||| |||||||||||  | ||||| |||||||    
T  7438768 acatgacaccgacacttgtaattacattgaattatgtgattttttcaaattattaactgtgtcggcatgtca 7438697  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 3262876 - 3262926
Alignment:
Q  153 gacaccgacacttgtagttacattcaaatatttgactttctcaaattatta 203  Q
    ||||| ||||| ||| ||| ||||||||||||| |||||||||||||||||    
T  3262876 gacactgacacatgtggttgcattcaaatatttcactttctcaaattatta 3262926  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 10335287 - 10335337
Alignment:
Q  153 gacaccgacacttgtagttacattcaaatatttgactttctcaaattatta 203  Q
    |||||||||||||||| ||||| | |||||| ||||||| |||||||||||    
T  10335287 gacaccgacacttgtatttacactaaaatatgtgactttttcaaattatta 10335337  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 8159920 - 8159884
Alignment:
Q  193 tcaaattattacatatgtcgacatgtcattgtcatat 229  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  8159920 tcaaattattacatgtgtcgacatgtcaatgtcatat 8159884  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 24102047 - 24102095
Alignment:
Q  156 accgacacttgtagttacattcaaatatttgactttctcaaattattac 204  Q
    |||||||| ||| |||||||||||||| || |||| |||||||||||||    
T  24102047 accgacacgtgtggttacattcaaatagttcacttactcaaattattac 24102095  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 8420085 - 8420013
Alignment:
Q  153 gacaccgacacttgtagttacattcaaatatttgactttctcaaattattacatatgtcgacatgtcattgtc 225  Q
    |||||||||||||||| ||||||| || ||| | | ||| |||||||||||  ||||||| | ||||||||||    
T  8420085 gacaccgacacttgtaattacattgaattatgttattttttcaaattattagctatgtcggcgtgtcattgtc 8420013  T

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