View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_high_13 (Length: 385)
Name: NF17072_high_13
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 353
Target Start/End: Complemental strand, 28614356 - 28614016
Alignment:
| Q |
14 |
aaattaattaaaaatagtaagtttatgaagttggatgcaaaattgcagtgcacaggaaaatgaatagggagaaacctgaatgcttccctttaatttcgct |
113 |
Q |
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| T |
28614356 |
aaattaattaaaaatagtaagtttatgaagttggatgcaaaattgcaatgcacaggaaaatgaatagggagaaacctgaatgcttccctttaatttcgct |
28614257 |
T |
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| Q |
114 |
catgcagcggc-ggtataataagtttgagtggaagtgggcgggtactaggtttgaattaggggtgtgtcaaatattcatctgatttaaacaccaaaatac |
212 |
Q |
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| T |
28614256 |
catgcagcggccggtataataagtttgagtggaaatgggcgggtactgggtttgaattaggggtgtgtcaaaaattcatctgatttaaacaccaaaatac |
28614157 |
T |
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| Q |
213 |
tcgccatttcagtttattttttcgtttatgtttatgttaacctctggtcaaaaaattctgatttcagaatctgattaggacacgcgaggaactcatagca |
312 |
Q |
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| T |
28614156 |
tcgccatttcagtttattttttcgtttatgtttatgttaacctctggtaaaaaaattctgattttagaatctgattaggacacgcgaggaactcatagca |
28614057 |
T |
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| Q |
313 |
tggtaaaagttaaggcgaaatgtcaatacctagtaattggg |
353 |
Q |
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| T |
28614056 |
tggtaaaagttaaggcgaaatgtcaatacctagtaattggg |
28614016 |
T |
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