View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_high_14 (Length: 383)
Name: NF17072_high_14
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 3845162 - 3845512
Alignment:
| Q |
20 |
gtctcgacttaaaccaataatactagtagcaggatcgaaacctgacgtcctacataatagttcttcaatgtctcgactcaaaccactaggtttcttgttt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |
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| T |
3845162 |
gtctcgacttaaaccaataatactagtagcaggatcgaaacctgacgtcctacataatagtccttcaatgtctcgactcaaaccactaggttactctttc |
3845261 |
T |
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| Q |
120 |
gaggtgtgtgtatgtattatcaaaatatcaatattttagagagccaattaagataattacaaagctttattaaaaaagactaatataaattgagtgatat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3845262 |
gaggtgtgtgtatgtattatcaaaatatcaatattttagagagccaattaagataattacaaagctttattaaaaaagactaatataaattgagtgatat |
3845361 |
T |
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| Q |
220 |
atagtatcaatgatgaagccagctccttactgtttcattatgttccttaaaatgatgaaaagtatgtgcagtatgacttattttactctaggtggaccaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3845362 |
atagtatcaatgatgaagccagctccttactgtttcattatgttccttaaaatgatgaaaagtatgtgcagtatgacttattttactctaggtggaccaa |
3845461 |
T |
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| Q |
320 |
gatcctgttttattttccctctagaaatttgtgaaatcaatactactattc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3845462 |
gatcctgttttattttccctctagaaatttgtgaaatcaatactactattc |
3845512 |
T |
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