View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_high_15 (Length: 382)
Name: NF17072_high_15
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_high_15 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 39 - 382
Target Start/End: Original strand, 51984972 - 51985315
Alignment:
| Q |
39 |
ttttccctgtttctaggttgcatgacatggatgccaattgattatcaattgcgagcgatgttaccttctgtgattccctattaaggctagaaagaacaca |
138 |
Q |
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| T |
51984972 |
ttttccctgtttctaggttgcatgacatggatgccaattgattatcaattgcgagcgatgttaccttctctgattccctattaaggctagaaagaacaca |
51985071 |
T |
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| Q |
139 |
aattattacacggggttggatgtgagtttttataatccgaatttttcaatttataagttggccattttattaatttattgttgatttcttacttcattac |
238 |
Q |
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| T |
51985072 |
aattattaaagggggttggatctgagtttttataatccgaatttttcaatttataagttggccattttattaatttattgttgatttcttacttcattac |
51985171 |
T |
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| Q |
239 |
tcttagattcatgtcagattatcttttgattattaattatcatgcaatccataagttgagcattttattaatttattgttcatttcttgttttgttattc |
338 |
Q |
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| T |
51985172 |
gcttagattcatgtcagattatcttttgattattaattatcatgcgatccataagttgggcattttattaatttattgttcatttcttgttttgttattc |
51985271 |
T |
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| Q |
339 |
ttagattcatgtatgattatcttttgattattatttatcagatg |
382 |
Q |
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| T |
51985272 |
ttagattcatgtctgattatcttttgattattatttatcagatg |
51985315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 191 - 376
Target Start/End: Original strand, 51985222 - 51985407
Alignment:
| Q |
191 |
ataagttggccattttattaatttattgttgatttcttacttcattactcttagattcatgtcagattatcttttgattattaattatcatgcaatccat |
290 |
Q |
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| T |
51985222 |
ataagttgggcattttattaatttattgttcatttcttgttttgttattcttagattcatgtctgattatcttttgattattatttatcagatgatccat |
51985321 |
T |
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| Q |
291 |
aagttgagcattttattaatttattgttcatttcttgttttgttattcttagattcatgtatgattatcttttgattattatttat |
376 |
Q |
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| T |
51985322 |
aagttgaacgttttattaatttattgttgatttcttactttattattcttagattcgtgttggattatcttttgattattgtttat |
51985407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 51984904 - 51984944
Alignment:
| Q |
3 |
caatgatcttatatacttgtatttctttaatttttcttttc |
43 |
Q |
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| T |
51984904 |
caatgatcttatatacttgtattcctttaatttttcttttc |
51984944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 52003601 - 52003529
Alignment:
| Q |
201 |
cattttattaatttattgttgatttcttacttcattactcttagattcatgtcagattatcttttgattatta |
273 |
Q |
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| T |
52003601 |
cattttattaatccattgtcgatttcttgcttcattatccttagatttgtgtctgattatcttttgatcatta |
52003529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 52003602 - 52003525
Alignment:
| Q |
298 |
gcattttattaatttattgttcatttcttgttttgttattcttagattcatgtatgattatcttttgattattattta |
375 |
Q |
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| T |
52003602 |
gcattttattaatccattgtcgatttcttgcttcattatccttagatttgtgtctgattatcttttgatcattattta |
52003525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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