View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_high_2 (Length: 656)

Name: NF17072_high_2
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_high_2
NF17072_high_2
[»] chr7 (1 HSPs)
chr7 (11-638)||(37183331-37183957)


Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 11 - 638
Target Start/End: Original strand, 37183331 - 37183957
Alignment:
Q  11 catcatcaacaaggtcatgaccatggaatatatcacagacattgttcccgaattgttttctcaaaacttgatccgcgggagaggtctcttctgcagatcc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37183331 catcatcaacaaggtcatgaccatggaatatatcacagacattgttcccgaattgttttctcaaaacttgatccgcgggagagggctcttctgcagatcc 37183430  T
Q  111 cttatgaactcacagatggcctatccg-agtataccattgagtttgccgcgcttgttgcggtcgtaaattccaagtttcctgaagtcggtaatcttttac 209  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37183431 cttatga--tcacagatggcctatccggagtataccattgagtttgccgcgcttgttgcggtcgtaaattccaagtttcctgaagtcggtaatcttttac 37183528  T
Q  210 tcagaagaattgttttgcaattcaaaagggcttatcataggaatgacaagcctcatcagttacatgctactgttaagtttatagcacatttggtgaaaca 309  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37183529 tcagaagaattgttttgcaattcaaatgggcttatcataggaatgacaagcctcatcagttacatgctactgttaagtttatagcacatttggtgaaaca 37183628  T
Q  310 gctagttgcacatgagattattgctttggtaatactcacggttttgcttgataaccctattgatgatagtcttgaagtagctgttagttttcttatagaa 409  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37183629 gctagttgcacatgagattattgctttggaaatactcacggttttgcttgataaccctattgatgatagtcttgaagtagctgttagttttcttatagaa 37183728  T
Q  410 tgcggttcaactttgcagaatctttcacctaaagcccttcatgctgtatttgagcgttttcgttggattttatatggtgaagttgataagcgtgttcagt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37183729 tgcggttcaactttgcagaatctttcacctaaagcccttcatgctgtatttgagcgttttcgttggattttatatggtgaagttgataagcgtgttcagt 37183828  T
Q  510 ttctaattcaagacttatttgctgtaagaaaaactaggtttcagagtcatccagctgttccacctgaattagacctcgtgaacgaggaggatcagttgac 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37183829 ttctaattcaagacttatttgctgtaagaaaaactaggtttcagagttatccagctgttccacctgaattagacctcgtggacgaggaggatcagttgac 37183928  T
Q  610 gcatgaagtgtcgtagaatgagagtatag 638  Q
    |||||||||||||| ||||||||||||||    
T  37183929 gcatgaagtgtcgttgaatgagagtatag 37183957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University