View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_high_21 (Length: 344)
Name: NF17072_high_21
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 3950031 - 3950351
Alignment:
| Q |
1 |
atacaacataaaactcacacccataactccgaggtcttgggttggaacacaggtaaagaggtccaacctatcaatatcggtattgtcagttaagctaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950031 |
atacaacataaaactcacacccataactccgaggtctcgggttggaacacaggtaaagaggtccaacctatcaatatcggtattgtcagttaagctaaac |
3950130 |
T |
|
| Q |
101 |
tttacaagctcgtggtaagaaaataatagtactaattgagttttgtgttaattttgatgaattttttctcttaaatgatttttattgcaaagttctgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950131 |
tttacaagctcgtggtaagaaaataatagtactaattgagttttgtgttaattttgatgaattttttctcttaaatgatttttattgcaaagttctgtgg |
3950230 |
T |
|
| Q |
201 |
gaattatccccattcatcgccatatccaaccatgaatttggatcctttcagtgtgtttgtatttttgcagtgacaacaatgattttgaatgaatttattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3950231 |
gaattatccccattcatcgccatatccaaccatgaatttggatcctttcagtgtgtttgtagttttgcagtgacaacaatgattttgaatgaatttattc |
3950330 |
T |
|
| Q |
301 |
tgtaaaattgggtttacttgt |
321 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
3950331 |
tgtaaaattgggtttacttgt |
3950351 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 44090615 - 44090562
Alignment:
| Q |
55 |
aaagaggtccaacctatcaatatcggtattgtcagttaagctaaactttacaag |
108 |
Q |
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||||| || ||||||| ||||||| |||||||||||| | |||||||||||||| |
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| T |
44090615 |
aaagatgttcaacctaacaatatcagtattgtcagttgatctaaactttacaag |
44090562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 25026127 - 25026159
Alignment:
| Q |
283 |
ttttgaatgaatttattctgtaaaattgggttt |
315 |
Q |
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||||||||||||| ||||||||||||||||||| |
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|
| T |
25026127 |
ttttgaatgaattgattctgtaaaattgggttt |
25026159 |
T |
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