View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_high_27 (Length: 295)
Name: NF17072_high_27
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 15805831 - 15805562
Alignment:
| Q |
8 |
attattctccatgaaaatttcaactatagtgagaatgtaaatttgatccaacacatgctaccagagtaccagtagtaaaagaaatgaaaaataagaacca |
107 |
Q |
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| T |
15805831 |
attactctccatgaaaatttcaactatagtgagaatgtaaatttgatccaacacatgctaccagagtaccagtagtaaaagaaatgaaaaataagaacca |
15805732 |
T |
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| Q |
108 |
gtaggtagaaggaaacacaacaaatgagtcaaattttcagaatcaagaaccaaatgaaccaattgacgaaagaatgacattcatgtaattggtattccat |
207 |
Q |
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| T |
15805731 |
gtaggtagaaggaaacacaacaaatgagtcaaattttcagaatcaagaaccaaatgaaccaattgacgaaagaatgacattcatgtaattggtattccat |
15805632 |
T |
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| Q |
208 |
cagaatagtagacgtgcaaaaatggtgtatttgaagatgaaacaaaggcaagtaacttggcacaataggt |
277 |
Q |
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| T |
15805631 |
cagaatagtagacgtgcaaaaatggtgtatttgaagatgaaacaaaggcaagcaacttggcacaataggt |
15805562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 3366785 - 3366524
Alignment:
| Q |
8 |
attattctccatgaaaatttcaactatagtgagaatgtaaatttgatccaacacatgctaccagagtaccagtagtaaaagaaatgaaaaataagaacca |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
3366785 |
attactctccatgaaaatttcaactatagtgagaatctaaatttgatccaacacatgctaccagt-----agta--aaaagaaatgaaaaataagaacca |
3366693 |
T |
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| Q |
108 |
gtaggtagaaggaaacacaacaaatgagtcaaattttcagaatcaagaaccaaatgaaccaattgacgaaagaatgacattcatgtaattggtattccat |
207 |
Q |
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| T |
3366692 |
ataggtagaaggaaacacaacaaatgagtcacattttcagaatcaagaaccaaatgaaccaattgaccaaagaatgacattcatgtaattggtattccgt |
3366593 |
T |
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| Q |
208 |
cagaatagtagacg--tgcaaaaatggtgtatttgaagatgaaacaaaggcaagtaacttggcacaatagg |
276 |
Q |
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|| ||||||||| | ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
3366592 |
caaaatagtagatgtatgcaaaaatggtg--tttgaagatgatacaaaggcaagtaatttggcacaatagg |
3366524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 3388140 - 3388325
Alignment:
| Q |
8 |
attattctccatgaaaatttcaactatagtgagaatgtaaatttgatccaacacatgctaccagagtaccagtagtaaaagaaatgaaaaataagaacca |
107 |
Q |
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|||| ||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||| || ||||| |||| |||||||||||||| |
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| T |
3388140 |
attactctccattgaaatttcaactatactgagtatctaaatttgatccaacacatgctaccag--------taataaaa-aaattaaaaataagaacca |
3388230 |
T |
|
| Q |
108 |
gtaggtagaaggaaacacaacaaatgagtcaaattttcagaatcaagaaccaaatgaaccaattgacgaaagaatgacattcatgtaattggtatt |
203 |
Q |
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| T |
3388231 |
gcagaatgaagtaaactcaacaaacgagtacactttt-agaatcaagaaccaaatgacccaattcaccaaagaagaacattcatgtaattggtatt |
3388325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 3320816 - 3320698
Alignment:
| Q |
8 |
attattctccatgaaaatttcaactatagtgagaatgtaaatttgatccaacacatgctaccagagtaccagtagtaaaagaaatgaaaaataagaacca |
107 |
Q |
| |
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|||| ||||||| |||||| ||||| | ||||||| |||||||||||||||||| || |||| || ||||||||||||||||||||||||||| |
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| T |
3320816 |
attagtctccattgaaattttaactagactgagaatctaaatttgatccaacacacgccacca-------ag-agtaaaagaaatgaaaaataagaacca |
3320725 |
T |
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| Q |
108 |
gtaggtagaaggaaacacaacaaatga |
134 |
Q |
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||| ||||||||||||||||||||| |
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| T |
3320724 |
atagaaagaaggaaacacaacaaatga |
3320698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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