View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_high_31 (Length: 259)

Name: NF17072_high_31
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_high_31
NF17072_high_31
[»] chr1 (4 HSPs)
chr1 (9-234)||(8455301-8455526)
chr1 (12-237)||(43403650-43403874)
chr1 (19-237)||(48769984-48770196)
chr1 (168-225)||(9094802-9094859)
[»] scaffold0060 (1 HSPs)
scaffold0060 (33-237)||(19004-19208)
[»] chr2 (2 HSPs)
chr2 (12-237)||(40275225-40275450)
chr2 (15-59)||(38346587-38346631)
[»] chr5 (1 HSPs)
chr5 (19-237)||(18979956-18980173)
[»] chr8 (2 HSPs)
chr8 (12-237)||(26155365-26155583)
chr8 (9-237)||(19168264-19168513)
[»] chr4 (2 HSPs)
chr4 (9-183)||(3958749-3958928)
chr4 (19-237)||(1558138-1558355)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 8455526 - 8455301
Alignment:
Q  9 gataattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8455526 gataattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttgt 8455427  T
Q  109 ttagcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgt 208  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  8455426 ttagcagttcaggtttcttttgattacaagcaacgcttaagctagatgctagtagtatctttgcattttaggagtagttttggctcgttttctcttgtgt 8455327  T
Q  209 tttctctctttgtatagggttcaggc 234  Q
    ||||||||||||||||||||||||||    
T  8455326 tttctctctttgtatagggttcaggc 8455301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 43403874 - 43403650
Alignment:
Q  12 aattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttattta 111  Q
    |||||| ||| |||||||||  |||| |||||||||| |||||| ||||| |  | ||||| | | | ||||| ||||| ||||||||||||||| | ||    
T  43403874 aattctttctcagtgggatatttttgattgttttgatttttggtatttctatgttgtagtgctagtt-tgttggtgaacatggctgcttttccttgtata 43403776  T
Q  112 gcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgtttt 211  Q
    ||| || |||||||||||||||  ||||| ||||||| |||||||||||  || | ||||||| |||||||||||||||| ||| ||||||||||   ||    
T  43403775 gcaatttaggtttcttttgattttaagcacagcttaaactagatgctagatgtttatttgcatcttaggagtagttttggtttgctttctcttgtacgtt 43403676  T
Q  212 ctctctttgtatagggttcaggccct 237  Q
    ||||||||||||||||||||||||||    
T  43403675 ctctctttgtatagggttcaggccct 43403650  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 48769984 - 48770196
Alignment:
Q  19 tcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttc 118  Q
    |||||||||||||  |||| |||||| |||||||| |||||||||| | ||||| | ||| ||||| ||| | ||||||| ||||||| |||||||| |     
T  48769984 tcttagtgggatatttttgattgtttagatatttgatctttctcttttgtagtgttagatttgttggtgatcatggctgcatttccttgtttagcagctt 48770083  T
Q  119 aggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctt 218  Q
    |||||||||||||||| |||||||||||||  |||||||||| ||| | ||||||| |||||||||||||||||||  ||||     | | |||||||||    
T  48770084 aggtttcttttgattaaaagcaaagcttaa-ttagatgctagaagtttctttgcatcttaggagtagttttggcttactttc-----tatgttctctctt 48770177  T
Q  219 tgtatagggttcaggccct 237  Q
    ||||||||||| |||||||    
T  48770178 tgtatagggtttaggccct 48770196  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 9094802 - 9094859
Alignment:
Q  168 tttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtatag 225  Q
    ||||||| ||||||  |||||||||||||||| |||||||| |||||| |||||||||    
T  9094802 tttgcatcttaggaaaagttttggcttgttttttcttgtgtgttctctgtttgtatag 9094859  T

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Target: scaffold0060 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 33 - 237
Target Start/End: Original strand, 19004 - 19208
Alignment:
Q  33 atttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcaggtttcttttgat 132  Q
    ||||| |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  19004 atttgattgttttgatatttggtctttctcttttatagtgctagatatgttgatgaacttggctgcttttcattgtttagcagttcaggtttcttttgat 19103  T
Q  133 tacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtatagggttcag 232  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19104 tacaagcaaagcttaagctagatgctagtagtatctttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtatagggtccag 19203  T
Q  233 gccct 237  Q
    |||||    
T  19204 gccct 19208  T

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Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 40275225 - 40275450
Alignment:
Q  12 aattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttattta 111  Q
    |||||| |||||||||||||  |||| |||||||||| ||||||||||||||  | ||||| | | ||||||| ||||| ||||||||||||||| ||||    
T  40275225 aattctttcttagtgggatatttttgattgttttgatttttggtctttctctgctgtagtgctagttatgttggtgaacatggctgcttttccttgttta 40275324  T
Q  112 gcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgtttt 211  Q
    |||| | |||||||||||||||  ||||||||||||| ||||||||||| ||| | ||||||| |||||||||||||||||||| |||||||||| | ||    
T  40275325 gcagcttaggtttcttttgattttaagcaaagcttaaactagatgctagaagtttctttgcatcttaggagtagttttggcttgctttctcttgtatgtt 40275424  T
Q  212 ctctctttgtatagggttcaggccct 237  Q
    ||||||||||||||||||||||||||    
T  40275425 ctctctttgtatagggttcaggccct 40275450  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 38346631 - 38346587
Alignment:
Q  15 tctatcttagtgggatagatttgtttgttttgatatttggtcttt 59  Q
    |||||||| |||||||||||  | |||||||||||||||||||||    
T  38346631 tctatcttggtgggatagataggattgttttgatatttggtcttt 38346587  T

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Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 18979956 - 18980173
Alignment:
Q  19 tcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttc 118  Q
    |||||||||||||  |||| |||||| ||||||||||||||||||| | ||||| | ||| ||||| ||| | ||||||| ||||||| ||||| || |     
T  18979956 tcttagtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttgttggtgatcatggctgcatttccttgtttagtagctt 18980055  T
Q  119 aggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctt 218  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||||| |||||||||||||||||||| |||||||||| | |||||||||    
T  18980056 aggtttcttttgattaaaagcaaagcttaa-ctagatgctagaagtttctttgcatcttaggagtagttttggcttgctttctcttgtatgttctctctt 18980154  T
Q  219 tgtatagggttcaggccct 237  Q
    |||||||||||||| ||||    
T  18980155 tgtatagggttcagaccct 18980173  T

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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 26155365 - 26155583
Alignment:
Q  12 aattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttattta 111  Q
    |||||| |||||||||||||  |||| ||||||||||||||       ||||| | ||||| | ||| ||||| ||||||||||||| ||||||| ||||    
T  26155365 aattctttcttagtgggataattttgattgttttgatattt-------ctcttttttagtgctagatgtgttggtgaacttggctgcatttccttgttta 26155457  T
Q  112 gcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgtttt 211  Q
    |||| | |||||||||||||||| ||||||||||||| ||||||||||| |||   ||||||| |||||||||||||||||||| ||||||||||   ||    
T  26155458 gcagcttaggtttcttttgattaaaagcaaagcttaatctagatgctagaagttactttgcatcttaggagtagttttggcttgctttctcttgtaggtt 26155557  T
Q  212 ctctctttgtatagggttcaggccct 237  Q
    ||||||||||||||||||||||||||    
T  26155558 ctctctttgtatagggttcaggccct 26155583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 19168264 - 19168513
Alignment:
Q  9 gataattctatcttagtgggatagatttg-tttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttcctta 107  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||| || ||||     
T  19168264 gataattctatcttagtgtgatagatttgattttttttgatatttggtctttctcttttatagtgctagatatgttggtgaacttggctgcatt-ccttg 19168362  T
Q  108 tttagcagttcaggt---------------------ttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagt 186  Q
    |||||||||| ||||                     |||||||||||||||||||||||||| ||||||||||| ||||| || |||| |||||| ||||    
T  19168363 tttagcagtttaggtttctgttttttgatattaggtttcttttgattacaagcaaagcttaatctagatgctagaagtatcttcgcatcttaggaatagt 19168462  T
Q  187 tttggcttgttttctcttgtgttttctctctttgtatagggttcaggccct 237  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  19168463 tttggcttgtttcctcttgtgttttctctctttgtatagggttcatgccct 19168513  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 3958928 - 3958749
Alignment:
Q  9 gataattctatcttagtgggatagatttgtttgttttg-----atatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttc 103  Q
    ||||||||||||||||| ||||||||||| ||||||||     |||||||||||||||||| ||||||| |  |||||||| ||||||||||||| ||||    
T  3958928 gataattctatcttagttggatagatttgattgttttgtttcaatatttggtctttctcttttatagtgctaaatatgttggtgaacttggctgcatttc 3958829  T
Q  104 cttatttagcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagt 183  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||| ||||||||    
T  3958828 cttgtttagcagtttaggtttcttttgattacaagcaaagcttaagctaaatgctagaagtttctttgcatcttaggagt 3958749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 1558355 - 1558138
Alignment:
Q  19 tcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttc 118  Q
    |||||||||||||  |||| |||||| ||||||||||||||||||| | ||||| | ||| ||||| ||| | |||| || ||||||| ||||| || |     
T  1558355 tcttagtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttgttggtgatcatggcagcatttccttgtttagaagctt 1558256  T
Q  119 aggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctt 218  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||||| ||||||||| |||||||||| |||||||||| | |||| ||||    
T  1558255 aggtttcttttgattaaaagcaaagcttaa-ctagatgctagaagtttctttgcatcttaggagtaattttggcttgctttctcttgtatgttctttctt 1558157  T
Q  219 tgtatagggttcaggccct 237  Q
    |||||| ||||||||||||    
T  1558156 tgtataaggttcaggccct 1558138  T

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