View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_high_7 (Length: 476)

Name: NF17072_high_7
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_high_7
NF17072_high_7
[»] chr2 (19 HSPs)
chr2 (1-458)||(32212218-32212661)
chr2 (4-102)||(32207146-32207244)
chr2 (207-355)||(32207299-32207447)
chr2 (1-94)||(32147579-32147672)
chr2 (1-90)||(32118491-32118581)
chr2 (1-77)||(2821339-2821414)
chr2 (1-91)||(32156411-32156501)
chr2 (1-77)||(32182287-32182363)
chr2 (1-94)||(32174184-32174277)
chr2 (1-93)||(32110225-32110317)
chr2 (14-94)||(32152340-32152420)
chr2 (1-67)||(32153369-32153435)
chr2 (28-94)||(32182213-32182279)
chr2 (1-62)||(32157550-32157611)
chr2 (30-94)||(2821410-2821474)
chr2 (121-163)||(32207273-32207315)
chr2 (1-31)||(32534228-32534258)
chr2 (118-163)||(32201068-32201113)
chr2 (45-94)||(32534177-32534226)
[»] chr6 (1 HSPs)
chr6 (118-163)||(12843775-12843820)
[»] chr5 (1 HSPs)
chr5 (118-154)||(32676882-32676918)
[»] chr7 (3 HSPs)
chr7 (118-159)||(8799630-8799671)
chr7 (118-163)||(44572658-44572703)
chr7 (126-163)||(45216160-45216197)
[»] chr4 (1 HSPs)
chr4 (118-163)||(54305528-54305573)
[»] chr1 (1 HSPs)
chr1 (118-159)||(23431738-23431779)
[»] chr8 (1 HSPs)
chr8 (118-150)||(15850714-15850746)


Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 32212218 - 32212661
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaagaacatgaactaggtagctatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32212218 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaaaaatgaagaaaatatcaaagaagaacatgaactaggtagctatga 32212317  T
Q  101 agcacggactctgacgaggactccgacacggacacctgacatgacactgacacgaacacgtcgcagacaccaacgcggattccgacccgggctccgaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212318 agcacggactctgacgaggactccgacacggacacctgacatgacactgacacgaacacgtcgcagacaccaacgcggattccgacccgggctccgaggc 32212417  T
Q  201 ggacacctgacacgaacacgtcgacacagttaatgtacaaaaacataagacactgaaactgctacctaaactgctagaaagcaaaccaaatattttgtgg 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||  ||||||    
T  32212418 ggacaccggacacgaacacgtcgacacagttaatgtacaaaaacataagacactg------------aaactgctagaaagcaaaccaaata--ttgtgg 32212503  T
Q  301 ggactctttaattactttacttggaggcatggctggtctcaagattgtttgtgttttggattactttacttggacttaggttgtttctctaaagcagctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  32212504 ggactctttaattactttacttggaggcatggctggtctcaagattgttggtgtttttgattactttacttggacttaggttgttgctctaaagcagctt 32212603  T
Q  401 cctcaatttgatgctcacgttccatgatttctaattgcagtcattaactgtaattgct 458  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||||||| ||||    
T  32212604 cctcaatttgatgctctagttccatgatttcaaattgcagtcattaactgtaactgct 32212661  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 32207146 - 32207244
Alignment:
Q  4 aagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaagaacatgaactaggtagctatgaag 102  Q
    |||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||| |||||||||||||||||||||| ||||||||||    
T  32207146 aagaccttatcaaatccctccaagccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactaggcagctatgaag 32207244  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 207 - 355
Target Start/End: Original strand, 32207299 - 32207447
Alignment:
Q  207 ctgacacgaacacgtcgacacagttaatgtacaaaaacataagacactgaaactgctacctaaactgctagaaagcaaaccaaatattttgtggggactc 306  Q
    ||||||||||||||||| ||||  |||| || |||||||||  |||  || |  ||||||| |||||| ||| ||||||| ||| ||||| |||||||||    
T  32207299 ctgacacgaacacgtcggcacaactaatttaaaaaaacatagaacaacgataaggctacctgaactgccagagagcaaacaaaagattttttggggactc 32207398  T
Q  307 tttaattactttacttggaggcatggctggtctcaagattgtttgtgtt 355  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  32207399 tttaattactttacttggaggcatggccggtctcaagattgttggtgtt 32207447  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32147672 - 32147579
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaagaacatgaactaggtag 94  Q
    |||||||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||  ||||||||||||    
T  32147672 tacaagaccttatcaaattcctccaagccaagaaaatgatcaaggaagagataaagattgaagaaaataacaaagaagaaggtgaactaggtag 32147579  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 32118581 - 32118491
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataa-agaatgaagaaaatatcaaagaagaacatgaactag 90  Q
    |||||||||||||  |||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  32118581 tacaagaccttattgaatccctccaagccaagaaaatgatcaaggaagagatgatagaatgaagaaaatatcaaagaagaacatgaactag 32118491  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2821339 - 2821414
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaa 77  Q
    |||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||    
T  2821339 tacaagaccttatcaaattcctccaagccaagaaacg-atgaaggaagagataaagaatgaagaaaacatcaaagaa 2821414  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 32156501 - 32156411
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaagaacatgaactagg 91  Q
    |||||||||||||||||| ||||||||  |||||||| |  ||||||||||||||||| ||||||||| |||||||||||  |||||||||    
T  32156501 tacaagaccttatcaaattcctccaagtaaagaaaatgaaaaaggaagagataaagaaggaagaaaatgtcaaagaagaatctgaactagg 32156411  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32182363 - 32182287
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaa 77  Q
    |||||||||||||||||| ||| |||||||||||||| || ||||||||| |||||||||||||||| ||| |||||    
T  32182363 tacaagaccttatcaaattcctgcaagccaagaaaatgatcaaggaagaggtaaagaatgaagaaaacatccaagaa 32182287  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32174277 - 32174184
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaagaacatgaactaggtag 94  Q
    ||||||||||||| | || ||||||||| |||||||| || ||||||||| |||| ||||||||||| || |||||||||  ||||||||||||    
T  32174277 tacaagaccttataatattcctccaagcaaagaaaatgatcaaggaagaggtaaaaaatgaagaaaacattaaagaagaaggtgaactaggtag 32174184  T

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Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 32110317 - 32110225
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaagaacatgaactaggta 93  Q
    |||||||||||||||||| ||||||||||||||||||  |  |||||||||  ||||  |||||||||| |||||||||||| || |||||||    
T  32110317 tacaagaccttatcaaattcctccaagccaagaaaatggtccaggaagagagtaagagagaagaaaatagcaaagaagaacaagatctaggta 32110225  T

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Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 32152420 - 32152340
Alignment:
Q  14 caaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaagaacatgaactaggtag 94  Q
    ||||||| |||||||||||||||| || |||||||| || || |||||||||| |||||||| ||||||||||||| ||||    
T  32152420 caaatccttccaagccaagaaaatgatcaaggaagacattaaaaatgaagaaattatcaaaggagaacatgaactatgtag 32152340  T

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Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32153435 - 32153369
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaagaaaa 67  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||  | ||||||||||||||||||||    
T  32153435 tacaataccttatcaaattcctccaagccaagaaaatcatcaaacatgagataaagaatgaagaaaa 32153369  T

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Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 32182279 - 32182213
Alignment:
Q  28 ccaagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaagaacatgaactaggtag 94  Q
    |||||||||| ||  ||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  32182279 ccaagaaaatgatcgaggaagagacaaagaatgaagaaaatatcaaagaagaaggtgaactaggtag 32182213  T

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Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32157611 - 32157550
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaagaaaatcatgaaggaagagataaagaatgaa 62  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||| | |||||||    
T  32157611 tacaagaccttatcaaattcctccaagccaagaaaatgatcaaggaagagattaggaatgaa 32157550  T

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Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 2821410 - 2821474
Alignment:
Q  30 aagaaaatcatgaaggaagagataaagaatgaagaaaatatcaaagaagaacatgaactaggtag 94  Q
    |||||||| ||  |||| |||||||||||||||||||||||| ||||||||  ||||||||||||    
T  2821410 aagaaaatgatcgaggatgagataaagaatgaagaaaatatccaagaagaatctgaactaggtag 2821474  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 32207273 - 32207315
Alignment:
Q  121 ctccgacacggacacctgacatgacactgacacgaacacgtcg 163  Q
    |||| ||||| |||| |||||||||||||||||||||||||||    
T  32207273 ctccaacacgaacacatgacatgacactgacacgaacacgtcg 32207315  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32534258 - 32534228
Alignment:
Q  1 tacaagaccttatcaaatccctccaagccaa 31  Q
    |||||||||||||||||||||||||||||||    
T  32534258 tacaagaccttatcaaatccctccaagccaa 32534228  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 32201113 - 32201068
Alignment:
Q  118 ggactccgacacggacacctgacatgacactgacacgaacacgtcg 163  Q
    ||||||| ||||| |||||||||| |||||||||||| ||||||||    
T  32201113 ggactccaacacgaacacctgacacgacactgacacggacacgtcg 32201068  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 32534226 - 32534177
Alignment:
Q  45 gaagagataaagaatgaagaaaatatcaaagaagaacatgaactaggtag 94  Q
    |||||| ||| |||||||||||||||||||||||||  |||| |||||||    
T  32534226 gaagaggtaaggaatgaagaaaatatcaaagaagaaggtgaattaggtag 32534177  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 12843775 - 12843820
Alignment:
Q  118 ggactccgacacggacacctgacatgacactgacacgaacacgtcg 163  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||    
T  12843775 ggactccgacacggacacttgacacgacactgacacaaacacgtcg 12843820  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 32676918 - 32676882
Alignment:
Q  118 ggactccgacacggacacctgacatgacactgacacg 154  Q
    |||||||||||||||||||||||| ||||||||||||    
T  32676918 ggactccgacacggacacctgacacgacactgacacg 32676882  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 8799630 - 8799671
Alignment:
Q  118 ggactccgacacggacacctgacatgacactgacacgaacac 159  Q
    |||||||||||||||||||||||| |||||| ||||| ||||    
T  8799630 ggactccgacacggacacctgacacgacacttacacggacac 8799671  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 44572703 - 44572658
Alignment:
Q  118 ggactccgacacggacacctgacatgacactgacacgaacacgtcg 163  Q
    |||||||||||||||| ||||||| |||||||||||| | ||||||    
T  44572703 ggactccgacacggactcctgacacgacactgacacggatacgtcg 44572658  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 45216197 - 45216160
Alignment:
Q  126 acacggacacctgacatgacactgacacgaacacgtcg 163  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  45216197 acacggacacctgacacgacactgacacggacacgtcg 45216160  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 54305528 - 54305573
Alignment:
Q  118 ggactccgacacggacacctgacatgacactgacacgaacacgtcg 163  Q
    ||||||| ||||||||||||||||  ||||||||||| ||||||||    
T  54305528 ggactccaacacggacacctgacacaacactgacacggacacgtcg 54305573  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 23431738 - 23431779
Alignment:
Q  118 ggactccgacacggacacctgacatgacactgacacgaacac 159  Q
    |||||||||||||||||||||| | ||||||||||| |||||    
T  23431738 ggactccgacacggacacctgatacgacactgacacaaacac 23431779  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 15850746 - 15850714
Alignment:
Q  118 ggactccgacacggacacctgacatgacactga 150  Q
    |||||||||||||||||||||||| ||||||||    
T  15850746 ggactccgacacggacacctgacacgacactga 15850714  T

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