View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17072_low_12 (Length: 401)
Name: NF17072_low_12
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 3151635 - 3151251
Alignment:
| Q |
7 |
cttatttccacagtttgttcgacaatagtatcattggtatcaattccaagcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3151635 |
cttatttccacagtttgttcgacaatagtgtcattggtatcaattccaagcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaaa |
3151536 |
T |
|
| Q |
107 |
gatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatttcctaaactcaaatgttctggagctacatctttgtccagtattccaccacaata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||||||||| |
|
|
| T |
3151535 |
gatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatttcctaaactcagatgttctggagccacatctttgtccagtactctaccacaata |
3151436 |
T |
|
| Q |
207 |
gcatttttgattcctcatagtgctcgaaagattctcactttctcttctagtacactcccaatcactacagaagaagtacaccattggtgtatcatcaatg |
306 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
3151435 |
acatttttgattcctcatagtgctcaaaagactcccactttctcttctagtacactcccaatcactacagaagaagtactcaattggtgtgtcatcaatg |
3151336 |
T |
|
| Q |
307 |
ttcagtttcatctgctggaaataaaattccgtggagttttcttggctgcagcagcatttctttgcatgcctgtgaccatagatatt |
392 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3151335 |
tttagtttcatctgctggaaataaatttccgtggag-tttcttggctgcagcagcatttctttgcatgcctgtgaccatagatatt |
3151251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 21194788 - 21194706
Alignment:
| Q |
55 |
agcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttc |
137 |
Q |
| |
|
||||| ||| |||| |||| ||||||| | ||| |||||||||||||| || ||||||||||||| ||||| | ||||||||| |
|
|
| T |
21194788 |
agcttttgaagtagttgtataactgttccaaaatcattaggcatcacacaaagatcgtcggaaataataaatgcagcagtttc |
21194706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 21200041 - 21199931
Alignment:
| Q |
55 |
agcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatttc |
154 |
Q |
| |
|
||||| ||| |||| |||| |||||| | |||||||||||||||||| || ||||||| ||||| ||||| | ||||||||| | |||||| || ||| |
|
|
| T |
21200041 |
agcttgtgaagtagttgtataactgtcccaaaaacattaggcatcacataaagatcgtctgaaataataaatgcagcagtttccttaacaaaaccgcttc |
21199942 |
T |
|
| Q |
155 |
ctaaactcaaa |
165 |
Q |
| |
|
|||| |||||| |
|
|
| T |
21199941 |
ctaagctcaaa |
21199931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 24284554 - 24284442
Alignment:
| Q |
53 |
caagcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatt |
152 |
Q |
| |
|
||||||| ||| |||| ||| ||||||| | |||||||||||||||||| | |||| || ||||| ||||| || || ||||| | | |||||||||| |
|
|
| T |
24284554 |
caagcttttgaagtagtggtataactgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatt |
24284455 |
T |
|
| Q |
153 |
tcctaaactcaaa |
165 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
24284454 |
tcctagactcaaa |
24284442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 24232218 - 24232270
Alignment:
| Q |
85 |
aaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttc |
137 |
Q |
| |
|
|||||||||||||| ||| || |||| || |||||||||||||||||| |||| |
|
|
| T |
24232218 |
aaaacattaggcataacacaaagatcatcagaaatgataaaagtagcattttc |
24232270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University