View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_18 (Length: 350)
Name: NF17072_low_18
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 11350282 - 11350626
Alignment:
| Q |
1 |
atgattatcgatgtaaccggttatttagtgagataaaatctg----------gttgttgtatgctttatgtataattaaataaattgaaaatacttcaca |
90 |
Q |
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| T |
11350282 |
atgattatcgatgtaaccggttatttagtgagataaaatctaattgttgattgttgttgtatgctttatgtataattaaataaattgaaaatacttcaca |
11350381 |
T |
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| Q |
91 |
gaaacacaagagtagcaccaccatcaaaatgagcactaaacctgcaagatnnnnnnntgaaactccaagactcgagacattggggtcagcatcaaaacat |
190 |
Q |
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| T |
11350382 |
aaaacacaagagtagcaccaccatcaaaatgagcactaaacctgcaagataaaaaaatgaaactccaagactcgagacattggggtcagcatcaaaacat |
11350481 |
T |
|
| Q |
191 |
gtctgcagagtcatggacccaatatccacgttcacacatagtatattatactataggagtattaaaacagtcacatatatagcctttattatatattcct |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11350482 |
gtctgcagagtcatggacccaatatccacgttcacacatagtatattatactataggagtattaaaatagtcacatatatagcctttattatatattcct |
11350581 |
T |
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| Q |
291 |
tcttcattaaataaccttcataatcatatctcaaagcagaataaa |
335 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11350582 |
tcttcattaaataaccttcataatcatatcccaaagcagaataaa |
11350626 |
T |
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