View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17072_low_19 (Length: 350)
Name: NF17072_low_19
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17072_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 24222281 - 24221960
Alignment:
| Q |
8 |
agattattctgaggttgtcaatggtctgcctgtaaagtttaccaggctagaagcaggccatgatataatctcaacaaacacagcacttgatatcgcattt |
107 |
Q |
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| T |
24222281 |
agattattctgaggttgtcaatggtctgcctgtaaagtttaccaggctagaagcaggccatgatataatctcaacaaacacagcacttgatatcgcattt |
24222182 |
T |
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| Q |
108 |
acaacaaagcccgactgtgctgaatcctccaagtgggtgttggttgatgattttaacaaattaactggaccatgggttggtattggtggtactgaagata |
207 |
Q |
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| T |
24222181 |
acaacaaagcccgactgtgctgaatcctccaagtgggtgttggttgatgattttaacaaattaactggaccatgggttggtattggtggtactgaagata |
24222082 |
T |
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| Q |
208 |
atgaaggtaagcatatcataaatggtttctttaaaattcagaaaaatggttttggatacaagcttgtgttctgtccagatatcactgccccacctggtgc |
307 |
Q |
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| T |
24222081 |
atgaaggtaagcatatcataaatggtttctttaaaattcagaaacatggttttggatacaagcttgtgttctgtccagatatcactgccccacctggtgc |
24221982 |
T |
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| Q |
308 |
ttgttatgatattgggaggcat |
329 |
Q |
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| T |
24221981 |
ttgttatgatattgggaggcat |
24221960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 20460694 - 20460543
Alignment:
| Q |
175 |
gaccatgggttggtattggtggtactgaagataatgaaggtaagcatatcataaatggtttctttaaaattcagaaaaatggttttggatacaagcttgt |
274 |
Q |
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|||||||||||||||||||||||| |||||| || |||||||||||||||| ||||| |||||||| |||| |||||||||||||||| ||||| |
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| T |
20460694 |
gaccatgggttggtattggtggtattgaagactatataggtaagcatatcatagatggtaagtttaaaatcgtgaaacatggttttggatacaaacttgt |
20460595 |
T |
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| Q |
275 |
gttctgtcc-agatatcactgccccacctggtgcttgttatgatattgggagg |
326 |
Q |
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||| ||||| | || ||||||| ||||| ||| |||| |||||||||||||| |
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| T |
20460594 |
gttttgtcctacat-tcactgctccaccaggtctttgtcatgatattgggagg |
20460543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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