View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_low_22 (Length: 323)

Name: NF17072_low_22
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_low_22
NF17072_low_22
[»] chr7 (1 HSPs)
chr7 (19-312)||(30868165-30868459)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 30868459 - 30868165
Alignment:
Q  19 ttttcctcatcaccaaatcattctgcacttttgcttttcgtgttggtctttcatggttatacccaccatcaccgtatagctcaagaatgaaaacaagttt 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30868459 ttttccccatcaccaaatcattctgcacttttgcttttcgtgttggtctttcatggttatacccaccatcaccgtaaagctcaagaatgaaaacaagttt 30868360  T
Q  119 tttcttcttcttaataatagaa-gccagttcatatatcaacgatatttttattaaaattcaattgtaacaaaaccttctcnnnnnnncgcaacagaagga 217  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||       |||||||||||||    
T  30868359 ttttttcttcttaataatagaatgccagttcatatatcaacgatatttttgttaaaattcaattgtaacaaatccttctcaaaaaaacgcaacagaagga 30868260  T
Q  218 agaattttttattgatcaacacctccaggtaccactaacactccccttgcgaccctatctcaataagcaatttccaggatcccaacaccattcat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30868259 agaattttttattgatcaacacctccaggtaccactaacactccccttgcgaccctatctcaataagcaatttccaggatcccaacaccattcat 30868165  T

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