View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17072_low_23 (Length: 321)

Name: NF17072_low_23
Description: NF17072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17072_low_23
NF17072_low_23
[»] chr1 (1 HSPs)
chr1 (13-312)||(5221084-5221383)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 5221383 - 5221084
Alignment:
Q  13 agtgacagatccggcgaattcgccaccacttcttctacctcccgacggctcttcctcgcctgcgcttccgaaaattccgatgacctcatccgtcaacttg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5221383 agtgacagatccggcgaattcgccaccacttcttctacctcccgacggctcttcctcgcctgcgcttccgaaaattccgatgacctcatccgtcaacttg 5221284  T
Q  113 tctccgatcttcactccgattcaatcgaagagcagaaacaagccgctatggaaattcgattactcgccaagaataaacctgaaaatcgaatcaaaatcgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5221283 tctccgatcttcactccgattcaatcgaagagcagaaacaagccgctatggaaattcgattactcgccaagaataaacctgaaaatcgaatcaaaatcgc 5221184  T
Q  213 taaagctggcgcaattaaaccgttaatttcgttagttacttcacaggacctgcaacttcaagaatacggtgttaccgcgattttgaatctctctctgtgc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5221183 taaagctggcgcaattaaaccgttaatttcgttagttacttcacaggacctgcaacttcaagaatacggtgttaccgcgattttgaatctctctttgtgc 5221084  T

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